Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37719 Trifolium pratense HOM05D002479 ORTHO05D002675 4.5e-124 448.0 234 100.0
Ca_10409_v3 Cicer arietinum L. HOM05D002479 ORTHO05D002675 6.9e-48 194.9 135 74.8
Medtr1g090120 Medicago truncatula HOM05D002479 ORTHO05D002675 1.5e-47 193.7 135 75.6
Lj5g0026763 Lotus japonicus HOM05D002479 ORTHO05D002675 2.0e-42 176.8 134 70.1
TPR.G39814 Trifolium pratense HOM05D002479 ORTHO05D002675 7.4e-34 148.3 85 88.2
arahy.Tifrunner.gnm1.ann1.13GU12 Arachis hypogaea HOM05D002479 ORTHO05D002675 3.5e-31 139.4 131 55.0
Lalb_Chr01g0020831 Lupinus albus HOM05D002479 ORTHO05D002675 1.7e-30 137.1 135 53.3
TPR.G22484 Trifolium pratense HOM05D002479 ORTHO05D002675 6.5e-30 135.2 139 49.6
Glyma.10G001500 Glycine max HOM05D002479 ORTHO05D002675 2.5e-29 133.3 137 52.6
Aqoxy2G03503 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 9.4e-29 131.3 145 46.9
CiPaw.01G192700 Carya illinoinensis HOM05D002479 ORTHO05D002675 1.6e-28 130.6 133 51.1
MD13G1203500 Malus domestica HOM05D002479 ORTHO05D002675 1.6e-28 130.6 150 46.0
PSO170G3719 Papaver somniferum HOM05D002479 ORTHO05D002675 2.1e-28 130.2 133 51.9
CANSAT78G2316 Cannabis sativa HOM05D002479 ORTHO05D002675 6.1e-28 128.6 131 51.9
Eucgr.D00099 Eucalyptus grandis HOM05D002479 ORTHO05D002675 6.1e-28 128.6 130 50.0
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 1.0e-27 127.9 179 43.0
Psat7g237360 Pisum sativum HOM05D002479 ORTHO05D002675 1.8e-27 127.1 173 45.1
Phvul.006G222000 Phaseolus vulgaris HOM05D002479 ORTHO05D002675 2.3e-27 126.7 135 50.4
Medtr1g040765 Medicago truncatula HOM05D002479 ORTHO05D002675 4.0e-27 125.9 136 49.3
TAR365G0241 Trochodendron aralioides HOM05D002479 ORTHO05D002675 4.0e-27 125.9 131 49.6
GSVIVG01018090001 Vitis vinifera HOM05D002479 ORTHO05D002675 8.8e-27 124.8 133 50.4
CDE06G1783 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 1.5e-26 124.0 150 43.3
Oeu064217.1 Olea europaea HOM05D002479 ORTHO05D002675 2.0e-26 123.6 142 47.2
Lj1P569T5 Lonicera japonica HOM05D002479 ORTHO05D002675 4.4e-26 122.5 136 52.2
Lj6g0009664 Lotus japonicus HOM05D002479 ORTHO05D002675 5.7e-26 122.1 129 50.4
Nitab4.5_0007585g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 9.7e-26 121.3 135 48.1
TWI09G1194 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 9.7e-26 121.3 127 50.4
Atru.chr4.2287 Acer truncatum HOM05D002479 ORTHO05D002675 1.3e-25 120.9 136 46.3
Actinidia06778 Actinidia chinensis HOM05D002479 ORTHO05D002675 2.2e-25 120.2 134 44.0
Actinidia07831 Actinidia chinensis HOM05D002479 ORTHO05D002675 2.2e-25 120.2 134 44.0
Psat6g170520 Pisum sativum HOM05D002479 ORTHO05D002675 2.2e-25 120.2 135 57.0
MSTRG.24708 Avicennia marina HOM05D002479 ORTHO05D002675 6.3e-25 118.6 135 48.9
Lju1074C3T5 Lonicera japonica HOM05D002479 ORTHO05D002675 6.3e-25 118.6 135 51.1
Sopen09g031990 Solanum pennellii HOM05D002479 ORTHO05D002675 6.3e-25 118.6 136 47.1
VMungo0720G1484 Vigna mungo HOM05D002479 ORTHO05D002675 8.2e-25 118.2 130 48.5
Solyc09g083110.3 Solanum lycopersicum HOM05D002479 ORTHO05D002675 1.1e-24 117.9 135 46.7
Nitab4.5_0001856g0030 Nicotiana tabacum HOM05D003117 ORTHO05D003612 1.4e-24 117.5 134 47.8
DCAR_005281 Daucus carota HOM05D002479 ORTHO05D002675 1.8e-24 117.1 140 43.6
PGSC0003DMG400006105 Solanum tuberosum HOM05D002479 ORTHO05D002675 4.1e-24 115.9 135 45.9
Ciclev10004292m.g Citrus clementina HOM05D002479 ORTHO05D002675 1.6e-23 114.0 133 48.1
Migut.N00231 Erythranthe guttata HOM05D002479 ORTHO05D002675 2.0e-23 113.6 128 47.7
PSO528G0065 Papaver somniferum HOM05D002479 ORTHO05D002675 2.0e-23 113.6 133 45.9
Gorai.006G245300 Gossypium raimondii HOM05D002479 ORTHO05D002675 3.5e-23 112.8 135 44.4
SGA_v2.0_scaffold79G25620 Striga asiatica HOM05D002479 ORTHO05D002675 3.8e-22 109.4 130 48.5
Potri.010G078900 Populus trichocarpa HOM05D002479 ORTHO05D002675 6.5e-22 108.6 134 46.3
Sabra10G0064300 Salix brachista HOM05D002479 ORTHO05D002675 8.5e-22 108.2 134 45.5
Manes.15G035300 Manihot esculenta HOM05D002479 ORTHO05D002675 1.5e-21 107.5 135 42.2
Prupe.1G026500 Prunus persica HOM05D002479 ORTHO05D002675 1.9e-21 107.1 140 47.1
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 2.5e-21 106.7 131 40.5
COL.COLO4_15763 Corchorus olitorius HOM05D003117 ORTHO05D003612 3.2e-21 106.3 133 43.6
Sabra03G0044700 Salix brachista HOM05D002479 ORTHO05D002675 3.2e-21 106.3 145 44.1
Gohir.D09G223800 Gossypium hirsutum HOM05D002479 ORTHO05D002675 4.2e-21 105.9 135 42.2
HanXRQChr06g0184931 Helianthus annuus HOM05D002479 ORTHO05D002675 4.2e-21 105.9 124 45.2
Thhalv10020060m.g Eutrema salsugineum HOM05D002479 ORTHO05D002675 5.5e-21 105.5 161 38.5
Ah.06g188690 Amaranthus hybridus HOM05D002479 ORTHO05D002675 3.6e-20 102.8 129 44.2
Nn1g02530 Nelumbo nucifera HOM05D002479 ORTHO05D002675 3.6e-20 102.8 160 38.8
RcHm_v2.0_Chr4g0388991 Rosa chinensis HOM05D002479 ORTHO05D002675 3.6e-20 102.8 131 42.7
BcaB06g26423 Brassica carinata HOM05D002479 ORTHO05D002675 4.7e-20 102.4 157 38.9
FAN22G0099 Fragaria x ananassa HOM05D002479 ORTHO05D002675 6.1e-20 102.1 134 44.8
Gohir.A09G221700 Gossypium hirsutum HOM05D002479 ORTHO05D002675 1.0e-19 101.3 127 43.3
Ah.13g068180 Amaranthus hybridus HOM05D002479 ORTHO05D002675 1.4e-19 100.9 129 43.4
RcHm_v2.0_Chr4g0389071 Rosa chinensis HOM05D002479 ORTHO05D002675 1.4e-19 100.9 112 49.1
BraA05t21449Z Brassica rapa HOM05D002479 ORTHO05D002675 1.8e-19 100.5 154 35.7
Medtr1g040725 Medicago truncatula HOM05D003117 ORTHO05D003612 1.8e-19 100.5 66 74.2
Medtr5g042370 Medicago truncatula HOM05D002479 ORTHO05D002675 1.8e-19 100.5 66 74.2
A05p25680 Brassica napus HOM05D002479 ORTHO05D002675 4.0e-19 99.4 154 36.4
Ah.13g068120 Amaranthus hybridus HOM05D002479 ORTHO05D002675 6.8e-19 98.6 129 43.4
QL06p014970 Quercus lobata HOM05D002479 ORTHO05D002675 1.2e-18 97.8 140 43.6
FAN17G1196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.5e-18 97.4 132 43.2
Sp3g20700 Schrenkiella parvula HOM05D002479 ORTHO05D002675 1.5e-18 97.4 154 40.9
TAR365G0877 Trochodendron aralioides HOM05D002479 ORTHO05D002675 1.5e-18 97.4 140 41.4
AUR62006894 Chenopodium quinoa HOM05D002479 ORTHO05D002675 2.0e-18 97.1 146 39.7
Cfa008402 Carpinus fangiana HOM05D002479 ORTHO05D002675 2.6e-18 96.7 133 39.1
FAN12G1103 Fragaria x ananassa HOM05D002479 ORTHO05D002675 2.6e-18 96.7 131 42.7
Haze_11266 Corylus avellana HOM05D002479 ORTHO05D002675 3.4e-18 96.3 133 39.1
Duzib212G0327 Durio zibethinus HOM05D002479 ORTHO05D002675 5.7e-18 95.5 134 39.6
THA.LOC104808589 Tarenaya hassleriana HOM05D002479 ORTHO05D002675 5.7e-18 95.5 135 36.3
AT3G23020 Arabidopsis thaliana HOM05D002479 ORTHO05D002675 7.5e-18 95.1 74 59.5
arahy.Tifrunner.gnm1.ann1.4S02NL Arachis hypogaea HOM05D000001 ORTHO05D009083 7.5e-18 95.1 72 62.5
BcaC05g27986 Brassica carinata HOM05D002479 ORTHO05D002675 9.8e-18 94.7 72 59.7
C05p39950 Brassica napus HOM05D002479 ORTHO05D002675 9.8e-18 94.7 72 59.7
BolC5t32740H Brassica oleracea HOM05D002479 ORTHO05D002675 9.8e-18 94.7 72 59.7
Phvul.007G135000 Phaseolus vulgaris HOM05D002479 ORTHO05D002675 9.8e-18 94.7 140 41.4
Zm00001eb004770 Zea mays HOM05D002479 ORTHO05D002675 9.8e-18 94.7 136 36.0
AL3G37450 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 1.3e-17 94.4 154 40.3
Thecc.04G243400 Theobroma cacao HOM05D002479 ORTHO05D002675 3.7e-17 92.8 131 40.5
Lalb_Chr21g0312681 Lupinus albus HOM05D002479 ORTHO05D002675 1.1e-16 91.3 136 47.1
Dinv05730 Davidia involucrata HOM05D002479 ORTHO05D002675 1.4e-16 90.9 137 38.7
CSS0026566 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 1.8e-16 90.5 140 37.9
CSS0032076 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 1.8e-16 90.5 140 37.9
Cpa.g.sc58.9 Carica papaya HOM05D002479 ORTHO05D002675 1.8e-16 90.5 139 40.3
AUR62000543 Chenopodium quinoa HOM05D002479 ORTHO05D002675 1.8e-16 90.5 142 38.7
Sabra19G0051900 Salix brachista HOM05D002479 ORTHO05D002675 5.4e-16 89.0 162 35.2
Sabra19G0052000 Salix brachista HOM05D002479 ORTHO05D002675 5.4e-16 89.0 162 35.2
VMungo0720G1235 Vigna mungo HOM05D002479 ORTHO05D002675 7.0e-16 88.6 134 41.8
SEGI_41252 Sequoiadendron giganteum HOM05D002479 ORTHO05D002675 1.6e-15 87.4 85 49.4
Sabra03G0044800 Salix brachista HOM05D002479 ORTHO05D002675 2.0e-15 87.0 109 46.8
AL57U10010 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 4.5e-15 85.9 154 38.3
Ca_12209_v3 Cicer arietinum L. HOM05D002479 ORTHO05D002675 5.9e-15 85.5 134 36.6
Sed0003943 Sechium edule HOM05D002479 ORTHO05D002675 5.9e-15 85.5 150 36.7
Peaxi162Scf00788g00034 Petunia axillaris HOM05D002479 ORTHO05D002675 1.0e-14 84.7 134 36.6
Lsat_1_v5_gn_5_67920 Lactuca sativa HOM05D002479 ORTHO05D002675 1.3e-14 84.3 120 39.2
Os03g0162900 Oryza sativa ssp. japonica HOM05D002479 ORTHO05D002675 1.7e-14 84.0 109 39.4
Cc03_g04610 Coffea canephora HOM05D002479 ORTHO05D002675 5.0e-14 82.4 127 40.2
FvH4_4g02020 Fragaria vesca HOM05D002479 ORTHO05D002675 5.0e-14 82.4 131 42.0
Lj8P116T30 Lonicera japonica HOM05D002479 ORTHO05D002675 5.0e-14 82.4 145 29.7
Sabra11G0090800 Salix brachista HOM05D002479 ORTHO05D002675 6.5e-14 82.0 153 35.9
CAN.G749.33 Capsicum annuum HOM05D002479 ORTHO05D002675 8.6e-14 81.6 142 37.3
MBI11_g15907_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 1.1e-13 81.3 57 66.7
EL10Ac4g09674 Beta vulgaris HOM05D002479 ORTHO05D002675 1.9e-13 80.5 143 35.7
ECA233G5632 Erigeron canadensis HOM05D003117 ORTHO05D003612 2.5e-13 80.1 134 33.6
Sabra15G0052600 Salix brachista HOM05D002479 ORTHO05D002675 2.5e-13 80.1 149 35.6
Glyma.10G193100 Glycine max HOM05D002479 ORTHO05D002675 7.2e-13 78.6 146 37.7
HanXRQChr14g0428761 Helianthus annuus HOM05D002479 ORTHO05D002675 9.5e-13 78.2 136 33.8
AL3G37420 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 2.1e-12 77.0 68 57.4
arahy.Tifrunner.gnm1.ann1.CUF5YV Arachis hypogaea HOM05D002479 ORTHO05D002675 2.1e-12 77.0 92 43.5
Glyma.20G197300 Glycine max HOM05D002479 ORTHO05D002675 2.8e-12 76.6 135 38.5
arahy.Tifrunner.gnm1.ann1.0PND55 Arachis hypogaea HOM05D002479 ORTHO05D002675 4.7e-12 75.9 136 33.8
Psat2g044680 Pisum sativum HOM05D002479 ORTHO05D002675 1.0e-11 74.7 145 32.4
TPR.G9992 Trifolium pratense HOM05D002479 ORTHO05D002675 1.0e-11 74.7 136 33.1
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 1.4e-11 74.3 128 35.2
Sc19g0003840 Simmondsia chinensis HOM05D002479 ORTHO05D002675 1.8e-11 73.9 144 33.3
Carub.0003s2318 Capsella rubella HOM05D002479 ORTHO05D002675 4.0e-11 72.8 72 50.0
CARHR098950 Cardamine hirsuta HOM05D002479 ORTHO05D002675 6.8e-11 72.0 130 35.4
MELO3C014273.2 Cucumis melo HOM05D002479 ORTHO05D002675 8.8e-11 71.6 133 39.8
CsaV3_4G030850 Cucumis sativus L. HOM05D002479 ORTHO05D002675 2.0e-10 70.5 134 38.1
arahy.Tifrunner.gnm1.ann1.FY6522 Arachis hypogaea HOM05D002479 ORTHO05D002675 2.6e-10 70.1 136 33.1
ATR0665G174 Amborella trichopoda HOM05D002479 ORTHO05D002675 3.4e-10 69.7 47 72.3
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 4.4e-10 69.3 125 41.6
Lalb_Chr15g0088581 Lupinus albus HOM05D002479 ORTHO05D002675 7.5e-10 68.6 128 32.0
AT1G73710 Arabidopsis thaliana HOM05D002479 ORTHO05D002675 4.9e-09 65.9 74 41.9
Ciclev10017547m.g Citrus clementina HOM05D002479 ORTHO05D002675 1.1e-08 64.7 136 27.2
Sabra13G0116800 Salix brachista HOM05D002479 ORTHO05D002675 1.1e-08 64.7 71 43.7
THA.LOC104824710 Tarenaya hassleriana HOM05D002479 ORTHO05D002675 2.4e-08 63.5 130 28.5
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 3.1e-08 63.2 123 30.1
Medtr5g077220 Medicago truncatula HOM05D002479 ORTHO05D002675 3.1e-08 63.2 146 28.1
Thecc.02G174000 Theobroma cacao HOM05D002479 ORTHO05D002675 3.1e-08 63.2 72 41.7
AL2G33510 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 4.1e-08 62.8 70 42.9
Sabra16G0279300 Salix brachista HOM05D002479 ORTHO05D002675 4.1e-08 62.8 127 35.4
ATR0693G368 Amborella trichopoda HOM05D002479 ORTHO05D002675 5.4e-08 62.4 127 28.3
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 5.4e-08 62.4 126 27.8
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 1.6e-07 60.8 137 32.1
Ca_05774_v3 Cicer arietinum L. HOM05D002479 ORTHO05D002675 5.9e-07 58.9 126 31.0
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 5.9e-07 58.9 145 27.6
PGR142G0526 Punica granatum HOM05D002479 ORTHO05D002675 7.8e-07 58.5 135 28.9
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 2.3e-06 57.0 129 28.7
Glyma.08G174800 Glycine max HOM05D002479 ORTHO05D002675 2.9e-06 56.6 124 29.0
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 5.0e-06 55.8 126 27.8
SalBow1G6410 Salvia bowleyana HOM05D002479 ORTHO05D002675 6.6e-06 55.5 164 25.0
Aa31LG8G9510 Aethionema arabicum HOM05D002479 ORTHO05D002675 8.6e-06 55.1 41 63.4
FAN04G3152 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.6e-06 55.1 148 27.7


User provided reference genes

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