Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 9.1e-254 879.8 455 100.0
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 1.8e-161 573.2 459 70.4
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 1.9e-155 553.1 465 70.1
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 1.3e-130 470.7 452 62.8
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 1.3e-130 470.7 452 62.8
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 7.3e-102 375.2 468 53.6
Glyma.05G050000 Glycine max HOM05D002977 ORTHO05D003225 1.1e-100 371.3 493 52.3
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 1.1e-100 371.3 475 52.6
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 2.2e-98 363.6 467 53.1
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 2.1e-85 320.5 468 48.5
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 9.2e-81 305.1 490 47.3
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea HOM05D002977 ORTHO05D003225 1.1e-65 255.0 498 39.6
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 2.4e-65 253.8 488 40.8
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 9.3e-65 251.9 482 39.8
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 1.8e-63 247.7 477 39.4
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 4.8e-61 239.6 482 38.6
arahy.Tifrunner.gnm1.ann1.BQI3IB Arachis hypogaea HOM05D002977 ORTHO05D003225 5.3e-60 236.1 488 39.5
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 6.9e-60 235.7 496 39.9
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 4.9e-58 229.6 480 40.0
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 1.9e-57 227.6 506 39.1
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 9.3e-57 225.3 460 38.9
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 2.7e-56 223.8 484 39.0
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 1.0e-55 221.9 463 40.2
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 5.1e-55 219.5 471 38.9
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 8.7e-55 218.8 484 38.8
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 1.1e-54 218.4 505 36.8
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 1.1e-54 218.4 465 38.3
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 4.3e-54 216.5 466 39.5
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 3.7e-53 213.4 460 38.9
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 8.2e-53 212.2 462 37.4
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 4.0e-52 209.9 479 38.4
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 9.0e-52 208.8 491 38.3
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 1.7e-50 204.5 473 37.0
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 8.4e-50 202.2 474 39.0
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 3.5e-48 196.8 499 34.5
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 1.3e-47 194.9 470 34.5
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 2.5e-46 190.7 482 36.1
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 2.5e-46 190.7 498 35.7
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 2.8e-45 187.2 502 36.7
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 3.7e-45 186.8 478 36.0
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 4.8e-45 186.4 481 33.5
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 6.9e-44 182.6 480 34.2
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 9.0e-44 182.2 484 35.7
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 1.2e-43 181.8 488 35.9
Glyma.01G215900 Glycine max HOM05D002977 ORTHO05D003225 3.4e-43 180.3 469 35.4
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.3e-42 178.3 506 32.8
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 1.3e-42 178.3 485 35.3
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 5.0e-42 176.4 490 35.3
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 7.2e-41 172.6 509 33.8
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 2.7e-40 170.6 476 32.8
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 2.7e-40 170.6 489 32.9
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 6.1e-40 169.5 502 34.1
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 7.9e-40 169.1 487 34.5
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 3.9e-39 166.8 479 31.5
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.5e-38 164.9 455 33.4
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 4.3e-38 163.3 479 34.4
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 4.3e-38 163.3 496 31.7
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 7.4e-38 162.5 470 34.9
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 1.3e-37 161.8 464 32.3
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 1.3e-37 161.8 482 34.4
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 2.2e-37 161.0 493 29.8
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 6.3e-37 159.5 455 34.3
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 8.2e-37 159.1 467 32.8
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 4.1e-36 156.8 383 39.2
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 6.9e-36 156.0 383 39.2
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 1.5e-35 154.8 383 38.9
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 3.4e-35 153.7 464 34.5
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 3.4e-35 153.7 493 32.9
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 3.8e-34 150.2 393 32.1
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 3.8e-34 150.2 481 33.5
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 8.5e-34 149.1 472 30.5
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 2.5e-33 147.5 460 30.7
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 2.5e-33 147.5 452 31.0
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 7.2e-33 146.0 218 43.1
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 7.2e-33 146.0 466 32.2
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 8.8e-31 139.0 489 32.1
CARHR254530 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.5e-30 138.3 487 33.1
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 9.7e-30 135.6 468 29.5
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 3.7e-29 133.7 488 31.4
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 4.8e-29 133.3 468 31.2
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 1.5e-27 128.3 480 32.1
Cpa.g.sc74.83 Carica papaya HOM05D002977 ORTHO05D003225 3.5e-27 127.1 183 39.3
CARHR230080 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.0e-26 125.6 452 32.3
Lalb_Chr16g0379981 Lupinus albus HOM05D002977 ORTHO05D003225 1.0e-26 125.6 451 31.3
AT4G11780 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 1.3e-26 125.2 496 31.9
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 2.2e-26 124.4 413 32.4
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 3.8e-26 123.6 483 31.1
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 5.0e-26 123.2 446 29.6
Thhalv10028604m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 5.0e-26 123.2 518 32.0
Lj2A196T48 Lonicera japonica HOM05D002977 ORTHO05D003225 6.5e-26 122.9 368 36.1
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 8.5e-26 122.5 479 30.7
BraA09t38300Z Brassica rapa HOM05D002977 ORTHO05D003225 2.5e-25 120.9 518 31.9
CSS0002536 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 9.4e-25 119.0 428 29.2
AL6G46490 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 1.2e-24 118.6 489 32.1
A09p27340 Brassica napus HOM05D002977 ORTHO05D003225 2.7e-24 117.5 518 31.5
C09p34660 Brassica napus HOM05D002977 ORTHO05D003225 2.7e-24 117.5 510 31.4
Sp6g05680 Schrenkiella parvula HOM05D002977 ORTHO05D003225 3.6e-24 117.1 503 30.6
BcaB05g23809 Brassica carinata HOM05D002977 ORTHO05D003225 8.0e-24 115.9 532 30.8
BcaB01g01677 Brassica carinata HOM05D002977 ORTHO05D003225 1.0e-23 115.5 489 32.5
A01p14320 Brassica napus HOM05D002977 ORTHO05D003225 1.4e-23 115.2 459 31.4
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 1.8e-23 114.8 452 28.5
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 1.8e-23 114.8 452 28.5
BolC9t56312H Brassica oleracea HOM05D002977 ORTHO05D003225 2.0e-22 111.3 526 30.8
AT4G23020 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 4.4e-22 110.2 460 30.7
A02p26000 Brassica napus HOM05D002977 ORTHO05D003225 9.7e-22 109.0 519 28.3
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 4.8e-21 106.7 460 28.0
BcaC09g51034 Brassica carinata HOM05D002977 ORTHO05D003225 8.2e-21 105.9 464 30.6
C01p17640 Brassica napus HOM05D002977 ORTHO05D003225 1.4e-20 105.1 462 29.4
Carub.0006s3089 Capsella rubella HOM05D002977 ORTHO05D003225 1.4e-20 105.1 511 28.6
BcaC03g16329 Brassica carinata HOM05D002977 ORTHO05D003225 7.0e-20 102.8 512 28.1
C02p41490 Brassica napus HOM05D002977 ORTHO05D003225 7.0e-20 102.8 512 28.1
Ciclev10023936m.g Citrus clementina HOM05D002977 ORTHO05D003225 9.1e-20 102.4 205 42.4
BolC2t10166H Brassica oleracea HOM05D002977 ORTHO05D003225 1.2e-19 102.1 516 28.9
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 4.5e-19 100.1 211 41.2
BraA02t07599Z Brassica rapa HOM05D002977 ORTHO05D003225 1.0e-18 99.0 527 27.7
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.0e-18 99.0 378 28.8
ECA246G0913 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.3e-18 98.6 470 27.0
Actinidia14518 Actinidia chinensis HOM05D000078 ORTHO05D003225 2.2e-18 97.8 323 29.1
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 2.2e-18 97.8 458 27.9
BraA01t01377Z Brassica rapa HOM05D002977 ORTHO05D003225 1.9e-17 94.7 477 28.9
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 3.2e-17 94.0 442 27.6
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 5.5e-17 93.2 463 29.6
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 1.6e-16 91.7 512 26.6
Carub.0007s1825 Capsella rubella HOM05D002977 ORTHO05D003225 3.6e-16 90.5 472 29.4
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 4.7e-16 90.1 430 29.3
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 8.0e-16 89.4 463 26.1
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.0e-15 89.0 461 27.3
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 1.2e-14 85.5 466 28.1
AL7G30500 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 1.5e-14 85.1 460 28.9
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 4.4e-14 83.6 446 26.2
Lj2C196G7 Lonicera japonica HOM05D002977 ORTHO05D003225 9.7e-14 82.4 109 39.4
Eucgr.E00527 Eucalyptus grandis HOM05D002977 ORTHO05D003225 1.3e-13 82.0 161 35.4
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 2.2e-13 81.3 465 25.4
Hma1.2p1_0371F.1_g138190 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 2.8e-13 80.9 172 34.3
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 3.7e-13 80.5 447 27.1
VMungo0331G1467 Vigna mungo HOM05D002977 ORTHO05D003225 8.3e-13 79.3 442 27.6
Lsat_1_v5_gn_3_5860 Lactuca sativa HOM05D002524 ORTHO05D002718 1.8e-12 78.2 466 25.3
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 3.1e-12 77.4 435 25.3
BcaB03g11755 Brassica carinata HOM05D002977 ORTHO05D003225 4.1e-12 77.0 375 28.8
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 4.1e-12 77.0 461 27.3
Cfa004177 Carpinus fangiana HOM05D002977 ORTHO05D003225 7.0e-12 76.3 459 27.2
Haze_15232 Corylus avellana HOM05D002977 ORTHO05D003225 7.0e-12 76.3 448 26.6
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 1.2e-11 75.5 430 27.0
BcaB01g02155 Brassica carinata HOM05D002977 ORTHO05D003225 1.2e-11 75.5 437 25.9
ECA236G0338 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.2e-11 75.5 290 26.2
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 1.2e-11 75.5 260 31.9
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 4.5e-11 73.6 435 25.5
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 7.7e-11 72.8 439 26.9
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 2.2e-10 71.2 439 24.8
Medtr8g032770 Medicago truncatula HOM05D002977 ORTHO05D003225 2.9e-10 70.9 455 26.2
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 3.8e-10 70.5 476 24.8
C03p39020 Brassica napus HOM05D002977 ORTHO05D003225 5.0e-10 70.1 435 25.3
BolC3t16174H Brassica oleracea HOM05D002977 ORTHO05D003225 5.0e-10 70.1 435 25.3
HanXRQChr06g0168991 Helianthus annuus HOM05D002977 ORTHO05D003225 6.5e-10 69.7 276 26.8
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 1.1e-09 68.9 441 24.5
Manes.05G040400 Manihot esculenta HOM05D002977 ORTHO05D003225 1.5e-09 68.6 456 25.4
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 1.9e-09 68.2 461 24.7
Glyma.07G079500 Glycine max HOM05D002977 ORTHO05D003225 3.2e-09 67.4 445 26.1
A03p32000 Brassica napus HOM05D002977 ORTHO05D003225 4.2e-09 67.0 444 24.5
PSO782G0819 Papaver somniferum HOM05D002977 ORTHO05D003225 5.5e-09 66.6 571 25.0
PSO478G2989 Papaver somniferum HOM05D002977 ORTHO05D003225 1.2e-08 65.5 569 24.1
Duzib133G0091 Durio zibethinus HOM05D002977 ORTHO05D003225 1.6e-08 65.1 214 27.6
Lj3g0026127 Lotus japonicus HOM05D002977 ORTHO05D003225 1.6e-08 65.1 441 23.8
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.1e-08 64.7 473 24.5
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 2.1e-08 64.7 460 23.7
Sc01g0008790 Simmondsia chinensis HOM05D002977 ORTHO05D003225 2.1e-08 64.7 569 24.4
Sp6g00770 Schrenkiella parvula HOM05D002977 ORTHO05D003225 2.7e-08 64.3 458 25.3
ATR0757G071 Amborella trichopoda HOM05D003485 ORTHO05D004004 4.7e-08 63.5 214 28.5
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 4.7e-08 63.5 471 25.7
Glyma.03G017800 Glycine max HOM05D002977 ORTHO05D003225 4.7e-08 63.5 445 26.1
Oeu024421.1 Olea europaea HOM05D002977 ORTHO05D003225 4.7e-08 63.5 432 25.7
Oeu024422.1 Olea europaea HOM05D002977 ORTHO05D003225 8.0e-08 62.8 432 25.7
Sabra14G0054900 Salix brachista HOM05D002977 ORTHO05D003225 8.0e-08 62.8 459 26.8
Potri.014G077400 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.0e-07 62.4 461 25.2
DCAR_008585 Daucus carota HOM05D002977 ORTHO05D003225 1.4e-07 62.0 344 26.7
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 1.8e-07 61.6 453 26.0
Ca_23758_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 3.0e-07 60.8 451 25.5
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 4.0e-07 60.5 441 23.4
AUR62043111 Chenopodium quinoa HOM05D003485 ORTHO05D004004 1.2e-06 58.9 220 27.3
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 1.2e-06 58.9 442 25.1
Psat4g151680 Pisum sativum HOM05D002977 ORTHO05D003225 1.5e-06 58.5 453 26.3
Thhalv10029270m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 4.4e-06 57.0 458 24.2
FAN09G2203 Fragaria x ananassa HOM05D003485 ORTHO05D004004 4.4e-06 57.0 326 26.7


User provided reference genes

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