Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 3.2e-102 375.2 200 100.0
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 3.7e-74 282.0 185 84.3
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 2.2e-71 272.7 185 83.2
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 2.4e-65 252.7 185 80.5
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 5.0e-55 218.4 185 69.2
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 8.5e-55 217.6 185 70.3
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 2.5e-54 216.1 192 70.8
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 6.1e-53 211.5 131 84.0
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 6.1e-53 211.5 131 84.0
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 2.6e-51 206.1 191 66.5
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 2.6e-51 206.1 185 68.6
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 5.7e-51 204.9 133 81.2
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.3e-50 203.8 187 63.6
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.3e-50 203.8 131 81.7
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 2.8e-50 202.6 131 82.4
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 2.8e-50 202.6 131 82.4
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 2.8e-50 202.6 160 70.0
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 8.3e-50 201.1 186 66.7
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.4e-49 200.3 186 67.2
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.8e-49 199.9 133 77.4
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.8e-49 199.9 192 60.9
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.4e-49 199.5 188 62.8
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.4e-49 199.5 188 62.8
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 2.4e-49 199.5 147 75.5
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 2.4e-49 199.5 147 75.5
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.1e-49 198.7 175 66.9
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 4.1e-49 198.7 198 62.1
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 4.1e-49 198.7 182 64.3
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 5.4e-49 198.4 159 69.8
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 7.0e-49 198.0 201 60.2
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 9.1e-49 197.6 141 73.8
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 9.1e-49 197.6 136 78.7
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 2.7e-48 196.1 160 68.8
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 3.5e-48 195.7 141 73.0
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 3.5e-48 195.7 160 68.1
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 3.5e-48 195.7 133 76.7
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 3.5e-48 195.7 140 75.0
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 4.5e-48 195.3 172 66.3
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 5.9e-48 194.9 141 73.0
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 5.9e-48 194.9 134 78.4
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 7.7e-48 194.5 172 67.4
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 7.7e-48 194.5 172 67.4
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 7.7e-48 194.5 189 61.9
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.0e-47 194.1 189 59.8
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.0e-47 194.1 174 66.7
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.0e-47 194.1 184 63.0
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.0e-47 194.1 182 62.1
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 1.3e-47 193.7 133 76.7
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.3e-47 193.7 152 71.1
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.3e-47 193.7 140 74.3
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.7e-47 193.4 135 74.1
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 2.3e-47 193.0 174 65.5
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 2.9e-47 192.6 131 75.6
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 2.9e-47 192.6 149 68.5
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 3.8e-47 192.2 185 61.6
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 5.0e-47 191.8 197 58.4
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 6.5e-47 191.4 133 75.2
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 6.5e-47 191.4 174 66.1
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 6.5e-47 191.4 190 61.1
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 8.6e-47 191.0 188 60.6
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 8.6e-47 191.0 184 62.5
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.1e-46 190.7 181 64.6
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.5e-46 190.3 188 61.2
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.5e-46 190.3 130 75.4
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.9e-46 189.9 174 64.9
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.9e-46 189.9 184 62.5
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 2.5e-46 189.5 132 75.0
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 3.3e-46 189.1 190 61.1
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 4.2e-46 188.7 150 68.7
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 4.2e-46 188.7 142 71.1
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 1.2e-45 187.2 131 75.6
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 1.2e-45 187.2 129 76.0
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.6e-45 186.8 182 59.9
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 2.1e-45 186.4 180 61.7
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.1e-45 186.4 189 61.4
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 2.8e-45 186.0 190 60.0
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.8e-45 186.0 132 73.5
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 4.7e-45 185.3 180 59.4
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 4.7e-45 185.3 154 67.5
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 8.0e-45 184.5 143 69.2
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 8.0e-45 184.5 176 61.4
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.0e-44 184.1 181 58.6
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.4e-44 183.7 192 57.8
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 1.4e-44 183.7 132 74.2
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.4e-44 183.7 182 61.0
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 1.8e-44 183.3 167 63.5
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.0e-44 182.6 130 73.8
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 5.2e-44 181.8 130 74.6
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 8.9e-44 181.0 131 71.0
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 8.9e-44 181.0 131 71.0
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 8.9e-44 181.0 131 72.5
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.2e-43 180.6 131 68.7
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.2e-43 180.6 179 59.8
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.5e-43 180.3 212 53.8
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 2.6e-43 179.5 130 73.1
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 4.4e-43 178.7 202 55.4
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 6.3e-42 174.9 132 72.7
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 8.3e-42 174.5 131 71.0
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 4.1e-41 172.2 222 53.2
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 7.0e-41 171.4 176 60.2
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 2.7e-40 169.5 172 58.7
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 1.1e-38 164.1 130 66.9
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.0e-36 157.5 130 64.6
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.0e-36 156.0 119 68.1
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 8.9e-36 154.5 172 52.3
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 7.5e-35 151.4 129 62.8
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 2.7e-32 142.9 147 59.2
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.5e-32 142.5 86 80.2
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.3e-30 136.0 128 58.6
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.6e-30 135.2 79 87.3
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 2.1e-29 133.3 208 50.5
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.0e-28 129.0 153 54.9
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 5.2e-28 128.6 104 66.3
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.8e-28 128.3 104 65.4
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 5.8e-27 125.2 158 50.6
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 7.5e-27 124.8 104 64.4
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.9e-26 122.9 96 66.7
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.6e-24 117.1 98 64.3
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.1e-22 110.9 85 62.4
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 4.3e-22 109.0 75 69.3
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 7.3e-22 108.2 89 61.8
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 9.5e-22 107.8 74 71.6
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.6e-21 107.1 103 59.2
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 6.2e-21 105.1 135 50.4
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 7.5e-19 98.2 86 55.8
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 4.1e-17 92.4 196 39.8
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 7.1e-17 91.7 196 39.3
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.1e-16 90.1 172 39.0
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 2.7e-16 89.7 196 37.2
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.0e-15 87.8 134 50.0
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 5.6e-14 82.0 84 48.8
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.7e-13 79.0 57 70.2
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 1.9e-09 67.0 51 70.6
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 9.2e-09 64.7 46 71.7
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.6e-08 63.9 93 43.0
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 6.0e-08 62.0 142 34.5


User provided reference genes

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