Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 5.0e-34 147.1 71 100.0
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 4.7e-32 140.6 71 94.4
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 6.8e-31 136.7 71 91.5
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 8.9e-31 136.3 71 91.5
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 4.9e-29 130.6 71 87.3
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 5.0e-26 120.6 70 78.6
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 6.6e-26 120.2 67 83.6
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 8.6e-26 119.8 67 82.1
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 1.1e-25 119.4 71 78.9
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 1.5e-25 119.0 71 76.1
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 1.5e-25 119.0 71 76.1
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 1.9e-25 118.6 67 80.6
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 1.9e-25 118.6 67 80.6
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 2.5e-25 118.2 67 80.6
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 7.3e-25 116.7 67 79.1
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 1.2e-24 115.9 68 75.0
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 1.6e-24 115.5 71 74.6
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 1.6e-24 115.5 67 80.6
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 1.6e-24 115.5 68 76.5
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 2.1e-24 115.2 66 80.3
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 2.8e-24 114.8 66 78.8
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 2.8e-24 114.8 67 79.1
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 3.6e-24 114.4 67 79.1
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 3.6e-24 114.4 67 77.6
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 4.7e-24 114.0 67 79.1
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 4.7e-24 114.0 67 77.6
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 4.7e-24 114.0 67 79.1
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 4.7e-24 114.0 67 79.1
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 6.2e-24 113.6 73 75.3
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 6.2e-24 113.6 67 79.1
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 6.2e-24 113.6 67 79.1
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 8.0e-24 113.2 67 76.1
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 8.0e-24 113.2 67 76.1
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 1.1e-23 112.8 67 74.6
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 1.1e-23 112.8 67 77.6
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 1.1e-23 112.8 67 77.6
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 1.1e-23 112.8 67 76.1
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 1.4e-23 112.5 66 77.3
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.4e-23 112.5 67 76.1
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.4e-23 112.5 67 76.1
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.4e-23 112.5 67 76.1
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 1.4e-23 112.5 67 79.1
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 1.4e-23 112.5 67 77.6
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 1.4e-23 112.5 67 76.1
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 1.8e-23 112.1 71 74.6
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.8e-23 112.1 67 79.1
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.8e-23 112.1 67 77.6
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 1.8e-23 112.1 67 76.1
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 2.3e-23 111.7 71 76.1
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 2.3e-23 111.7 71 74.6
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 3.1e-23 111.3 67 76.1
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 3.1e-23 111.3 67 74.6
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 3.1e-23 111.3 67 76.1
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 4.0e-23 110.9 67 76.1
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 4.0e-23 110.9 67 74.6
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 5.2e-23 110.5 71 71.8
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 5.2e-23 110.5 66 74.2
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 5.2e-23 110.5 67 77.6
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 5.2e-23 110.5 67 77.6
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 6.8e-23 110.2 68 75.0
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 6.8e-23 110.2 66 77.3
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 8.9e-23 109.8 67 76.1
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 1.2e-22 109.4 67 76.1
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 1.2e-22 109.4 71 71.8
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 1.2e-22 109.4 65 75.4
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 1.2e-22 109.4 67 77.6
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.2e-22 109.4 66 77.3
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 1.5e-22 109.0 66 77.3
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 1.5e-22 109.0 67 74.6
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 1.5e-22 109.0 66 74.2
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 1.5e-22 109.0 67 70.1
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 1.5e-22 109.0 71 74.6
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 1.5e-22 109.0 66 75.8
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 2.0e-22 108.6 66 72.7
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 2.0e-22 108.6 66 72.7
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 2.0e-22 108.6 67 76.1
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 2.0e-22 108.6 68 75.0
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 2.0e-22 108.6 67 68.7
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 2.0e-22 108.6 67 73.1
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 2.0e-22 108.6 67 74.6
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 2.0e-22 108.6 67 71.6
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 2.6e-22 108.2 66 74.2
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 2.6e-22 108.2 67 74.6
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 2.6e-22 108.2 67 77.6
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 2.6e-22 108.2 67 74.6
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.6e-22 108.2 66 75.8
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 3.4e-22 107.8 67 74.6
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 3.4e-22 107.8 67 76.1
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 4.4e-22 107.5 67 73.1
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 4.4e-22 107.5 67 73.1
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 4.4e-22 107.5 66 72.7
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 4.4e-22 107.5 66 74.2
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 4.4e-22 107.5 68 72.1
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 4.4e-22 107.5 71 70.4
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 74.6
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 73.1
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 73.1
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 74.6
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 73.1
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 73.1
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 74.6
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 73.1
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 73.1
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 73.1
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 74.6
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 73.1
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 71.6
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 5.8e-22 107.1 66 72.7
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 5.8e-22 107.1 67 73.1
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 7.5e-22 106.7 67 73.1
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 7.5e-22 106.7 67 73.1
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 7.5e-22 106.7 67 73.1
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 7.5e-22 106.7 65 73.8
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 7.5e-22 106.7 66 72.7
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 7.5e-22 106.7 66 72.7
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 9.8e-22 106.3 67 73.1
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 9.8e-22 106.3 67 73.1
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 9.8e-22 106.3 66 72.7
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 1.3e-21 105.9 66 72.7
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 1.3e-21 105.9 66 74.2
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 1.7e-21 105.5 67 70.1
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.7e-21 105.5 66 75.8
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 1.7e-21 105.5 67 74.6
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 2.2e-21 105.1 66 72.7
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 2.2e-21 105.1 66 71.2
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 2.2e-21 105.1 66 74.2
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 3.7e-21 104.4 67 70.1
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 3.7e-21 104.4 67 71.6
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 4.9e-21 104.0 67 71.6
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 6.4e-21 103.6 67 67.2
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 1.1e-20 102.8 66 69.7
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 1.1e-20 102.8 71 66.2
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 1.9e-20 102.1 67 71.6
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 2.4e-20 101.7 66 71.2
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 3.2e-20 101.3 67 70.1
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 3.2e-20 101.3 66 66.7
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 4.1e-20 100.9 67 70.1
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 4.1e-20 100.9 64 73.4
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 5.4e-20 100.5 64 68.8
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 7.0e-20 100.1 67 70.1
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.6e-19 99.0 67 70.1
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.6e-19 99.0 67 70.1
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 1.6e-19 99.0 67 70.1
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.1e-19 98.6 67 73.1
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 2.1e-19 98.6 71 69.0
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 2.7e-19 98.2 67 67.2
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.7e-18 95.5 61 68.9
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 3.0e-18 94.7 71 64.8
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 1.4e-15 85.9 55 70.9
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 1.8e-15 85.5 55 69.1
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 4.0e-15 84.3 59 64.4
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 6.8e-15 83.6 60 68.3
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 8.9e-15 83.2 60 68.3
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 1.2e-14 82.8 49 73.5
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 1.5e-14 82.4 51 72.5
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 2.6e-14 81.6 51 70.6
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 4.4e-14 80.9 51 72.5
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 2.2e-13 78.6 51 68.6
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 8.3e-13 76.6 50 64.0
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.1e-12 76.3 51 68.6
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 5.4e-12 73.9 52 65.4
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 7.1e-12 73.6 52 67.3
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 9.2e-12 73.2 51 64.7
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.2e-11 72.8 52 63.5
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 2.3e-10 68.6 50 66.0
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 1.5e-09 65.9 50 70.0
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 1.5e-09 65.9 47 66.0
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 2.5e-09 65.1 56 51.8
PSO384G1920 Papaver somniferum HOM05D004126 ORTHO05D004818 3.6e-08 61.2 40 67.5
Pp3c19_5160 Physcomitrium patens HOM05D004126 ORTHO05D004818 8.1e-08 60.1 61 50.8
BcaB02g06868 Brassica carinata HOM05D004126 ORTHO05D004818 1.5e-06 55.8 34 67.6


User provided reference genes

Program Settings