Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 1.6e-44 182.6 103 100.0
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 4.7e-33 144.4 90 86.7
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 2.3e-32 142.1 90 88.9
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 2.0e-31 139.0 92 91.3
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 7.1e-29 130.6 91 81.3
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 1.2e-25 119.8 91 79.1
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 2.8e-25 118.6 88 77.3
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 2.8e-25 118.6 92 77.2
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 6.2e-25 117.5 89 75.3
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 3.4e-23 111.7 89 74.2
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 7.8e-20 100.5 92 69.6
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 2.3e-19 99.0 103 60.2
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 5.1e-19 97.8 95 64.2
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 6.6e-19 97.4 91 67.0
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 6.6e-19 97.4 98 63.3
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 8.7e-19 97.1 94 62.8
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.9e-18 95.9 99 60.6
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 4.3e-18 94.7 100 59.0
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 5.6e-18 94.4 102 58.8
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 5.6e-18 94.4 100 57.0
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 3.6e-17 91.7 100 56.0
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 4.8e-17 91.3 92 64.1
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 6.2e-17 90.9 98 59.2
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 6.2e-17 90.9 87 65.5
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 8.1e-17 90.5 91 60.4
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 1.4e-16 89.7 98 59.2
arahy.Tifrunner.gnm1.ann1.QP3VPD Arachis hypogaea HOM05D006762 ORTHO05D003505 1.8e-16 89.4 92 65.2
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 1.8e-16 89.4 97 59.8
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 3.1e-16 88.6 96 59.4
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.0e-16 88.2 93 60.2
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 5.3e-16 87.8 93 60.2
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 5.3e-16 87.8 93 60.2
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 9.0e-16 87.0 107 56.1
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 1.5e-15 86.3 94 59.6
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 2.6e-15 85.5 88 60.2
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 2.6e-15 85.5 96 57.3
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 2.6e-15 85.5 96 57.3
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 3.4e-15 85.1 95 57.9
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 3.4e-15 85.1 105 58.1
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 4.4e-15 84.7 88 61.4
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 5.8e-15 84.3 93 61.3
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 5.8e-15 84.3 100 56.0
Glyma.17G210100 Glycine max HOM05D006762 ORTHO05D003505 9.9e-15 83.6 87 60.9
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 2.9e-14 82.0 99 58.6
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 2.9e-14 82.0 99 58.6
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 2.9e-14 82.0 99 55.6
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 3.8e-14 81.6 101 51.5
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 3.8e-14 81.6 100 55.0
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 3.8e-14 81.6 99 55.6
arahy.Tifrunner.gnm1.ann1.D6ADVN Arachis hypogaea HOM05D006762 ORTHO05D003505 6.4e-14 80.9 89 60.7
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 6.4e-14 80.9 100 53.0
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 6.4e-14 80.9 98 59.2
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 8.4e-14 80.5 98 54.1
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 8.4e-14 80.5 99 54.5
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 1.1e-13 80.1 91 60.4
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 1.1e-13 80.1 95 54.7
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 1.9e-13 79.3 93 55.9
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 2.4e-13 79.0 95 55.8
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 2.4e-13 79.0 94 56.4
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 3.2e-13 78.6 101 52.5
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 3.2e-13 78.6 98 53.1
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 4.2e-13 78.2 100 52.0
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 4.2e-13 78.2 100 52.0
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 5.4e-13 77.8 102 52.0
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 5.4e-13 77.8 100 52.0
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 5.4e-13 77.8 96 53.1
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 5.4e-13 77.8 96 53.1
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 5.4e-13 77.8 96 50.0
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 5.4e-13 77.8 93 55.9
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 5.4e-13 77.8 101 52.5
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 5.4e-13 77.8 100 53.0
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 7.1e-13 77.4 93 54.8
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 7.1e-13 77.4 95 56.8
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 9.3e-13 77.0 88 59.1
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 9.3e-13 77.0 89 56.2
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 1.2e-12 76.6 93 54.8
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 1.2e-12 76.6 95 56.8
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 2.1e-12 75.9 100 51.0
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 2.1e-12 75.9 100 51.0
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 2.1e-12 75.9 100 52.0
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 2.1e-12 75.9 98 52.0
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 2.1e-12 75.9 102 53.9
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 2.1e-12 75.9 98 54.1
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 3.5e-12 75.1 92 55.4
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 4.6e-12 74.7 99 54.5
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 6.0e-12 74.3 89 53.9
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 7.8e-12 73.9 99 51.5
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.7e-11 72.8 101 49.5
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 3.0e-11 72.0 99 50.5
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 3.9e-11 71.6 98 50.0
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 5.1e-11 71.2 101 51.5
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 5.1e-11 71.2 101 51.5
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 5.1e-11 71.2 88 51.1
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 8.7e-11 70.5 95 51.6
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 2.5e-10 68.9 105 50.5
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 7.3e-10 67.4 91 51.6
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.3e-09 66.6 96 49.0
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.6e-09 66.2 94 50.0
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 2.1e-09 65.9 103 45.6
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 2.8e-09 65.5 88 52.3
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 3.6e-09 65.1 92 51.1
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.8e-09 64.7 87 52.9
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.8e-09 64.7 87 52.9
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 8.1e-09 63.9 97 48.5
HPP92_025465 Vanilla planifolia HOM05D006762 ORTHO05D003505 1.8e-08 62.8 100 49.0
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 6.9e-08 60.8 72 56.9
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 9.0e-08 60.5 75 58.7
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 9.0e-08 60.5 99 46.5
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.2e-07 60.1 92 45.7
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.5e-07 59.7 67 56.7
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.5e-07 59.7 90 48.9
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 2.6e-07 58.9 101 44.6
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 2.6e-07 58.9 72 55.6
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 3.4e-07 58.5 91 48.4
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 5.8e-07 57.8 45 68.9
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.8e-07 57.8 84 50.0
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 5.8e-07 57.8 84 50.0
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 5.8e-07 57.8 85 49.4
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 5.8e-07 57.8 94 46.8
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 9.9e-07 57.0 92 47.8
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 9.9e-07 57.0 65 53.8
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 9.9e-07 57.0 59 57.6
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 9.9e-07 57.0 59 57.6
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 9.9e-07 57.0 94 46.8
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 1.3e-06 56.6 90 44.4
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.3e-06 56.6 91 47.3
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 1.7e-06 56.2 90 47.8
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 1.7e-06 56.2 90 47.8
TPR.G28732 Trifolium pratense HOM05D006762 ORTHO05D022366 1.7e-06 56.2 81 50.6
Lalb_Chr16g0379561 Lupinus albus HOM05D006762 ORTHO05D237716 2.2e-06 55.8 87 47.1
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 2.2e-06 55.8 89 51.7
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 2.9e-06 55.5 86 45.3
HPP92_014491 Vanilla planifolia HOM05D006762 ORTHO05D003505 2.9e-06 55.5 107 43.0
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 3.8e-06 55.1 64 53.1
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 3.8e-06 55.1 87 46.0
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.8e-06 55.1 88 47.7
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 3.8e-06 55.1 45 68.9
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 4.9e-06 54.7 70 48.6
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 4.9e-06 54.7 77 46.8
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 4.9e-06 54.7 53 56.6
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 4.9e-06 54.7 92 46.7
Glyma.03G118000 Glycine max HOM05D006762 ORTHO05D022366 4.9e-06 54.7 88 47.7
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 4.9e-06 54.7 90 43.3
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 6.4e-06 54.3 70 55.7
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 6.4e-06 54.3 59 55.9
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 6.4e-06 54.3 92 42.4
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 8.4e-06 53.9 81 51.9
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 8.4e-06 53.9 91 50.5


User provided reference genes

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