Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 3.1e-33 144.4 68 100.0
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 3.2e-22 107.8 50 96.0
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 9.4e-22 106.3 50 94.0
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 2.7e-21 104.8 50 94.0
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 3.6e-21 104.4 50 92.0
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 3.6e-21 104.4 50 92.0
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 3.6e-21 104.4 50 94.0
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 3.6e-21 104.4 50 92.0
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 3.6e-21 104.4 50 92.0
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 6.1e-21 103.6 50 92.0
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 6.1e-21 103.6 50 92.0
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 6.1e-21 103.6 50 92.0
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 6.1e-21 103.6 50 92.0
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 8.0e-21 103.2 50 92.0
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 8.0e-21 103.2 50 92.0
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 8.0e-21 103.2 50 92.0
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-21 103.2 47 95.7
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 8.0e-21 103.2 50 92.0
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 8.0e-21 103.2 50 92.0
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 1.0e-20 102.8 50 92.0
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.4e-20 102.4 50 92.0
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 1.8e-20 102.1 50 92.0
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 1.8e-20 102.1 50 92.0
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 1.8e-20 102.1 50 90.0
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.8e-20 102.1 50 88.0
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 1.8e-20 102.1 50 92.0
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 1.8e-20 102.1 50 92.0
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 1.8e-20 102.1 50 92.0
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 1.8e-20 102.1 50 92.0
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 1.8e-20 102.1 50 92.0
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 2.3e-20 101.7 50 92.0
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 2.3e-20 101.7 50 92.0
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 2.3e-20 101.7 50 92.0
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 2.3e-20 101.7 50 90.0
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 2.3e-20 101.7 50 92.0
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 3.0e-20 101.3 50 90.0
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 3.0e-20 101.3 50 92.0
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 3.0e-20 101.3 50 92.0
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 4.0e-20 100.9 50 90.0
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 4.0e-20 100.9 50 88.0
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 6.8e-20 100.1 50 90.0
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 8.8e-20 99.8 50 90.0
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 8.8e-20 99.8 50 88.0
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 1.2e-19 99.4 50 90.0
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 1.5e-19 99.0 50 90.0
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 7.5e-19 96.7 50 84.0
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 7.5e-19 96.7 50 86.0
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 2.2e-18 95.1 48 89.6
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 3.7e-18 94.4 48 89.6
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 3.7e-18 94.4 50 84.0
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.8e-18 94.0 48 87.5
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 8.3e-18 93.2 47 87.2
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 1.8e-17 92.0 48 87.5
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 5.3e-17 90.5 50 80.0
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 7.0e-17 90.1 50 82.0
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 7.0e-17 90.1 50 82.0
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 7.0e-17 90.1 50 82.0
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 7.0e-17 90.1 50 82.0
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 9.1e-17 89.7 50 80.0
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 2.0e-16 88.6 50 80.0
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 3.5e-16 87.8 41 92.7
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.9e-16 87.0 41 90.2
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 5.9e-16 87.0 43 90.7
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 6.5e-15 83.6 39 92.3
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.5e-14 82.4 40 92.5
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.2e-14 80.9 43 88.4
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 4.2e-14 80.9 41 87.8
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 4.7e-13 77.4 43 86.0
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 1.2e-11 72.8 50 76.0
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 1.5e-11 72.4 35 88.6
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.6e-11 71.6 50 70.0
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.6e-11 71.6 50 70.0
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.6e-11 71.6 50 70.0
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.3e-10 69.3 35 85.7
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.3e-10 69.3 50 72.0
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.2e-08 62.8 48 62.5
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 7.7e-08 60.1 27 100.0
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 5.0e-07 57.4 26 96.2
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 8.6e-07 56.6 30 86.7


User provided reference genes

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