Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 6.2e-214 747.3 401 100.0
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 6.0e-193 677.6 402 87.3
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 1.9e-191 672.5 403 86.8
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 3.3e-191 671.8 402 91.5
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 1.3e-174 616.7 405 79.8
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 2.8e-174 615.5 365 87.1
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 4.8e-174 614.8 370 85.1
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 5.3e-173 611.3 404 79.5
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 3.2e-170 602.1 381 81.1
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 4.7e-169 598.2 368 82.9
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 1.4e-165 586.6 403 75.2
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 1.2e-164 583.6 404 75.7
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 1.0e-163 580.5 369 80.8
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 1.5e-162 576.6 408 74.8
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 2.5e-162 575.9 414 73.4
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 3.2e-162 575.5 404 74.8
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 4.2e-162 575.1 404 74.5
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 6.1e-161 571.2 356 81.2
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.4e-160 570.1 403 73.4
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 1.8e-160 569.7 367 78.5
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 1.8e-160 569.7 367 79.0
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 4.0e-160 568.5 363 80.2
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 5.2e-160 568.2 365 78.9
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 6.7e-160 567.8 408 72.1
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 1.1e-159 567.0 365 78.6
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.5e-159 566.6 374 78.6
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.0e-159 566.2 374 77.5
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 2.6e-159 565.8 356 80.1
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.6e-159 565.8 374 77.5
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 7.5e-159 564.3 363 79.1
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 7.5e-159 564.3 356 81.7
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 9.7e-159 563.9 408 71.6
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 2.2e-158 562.8 352 80.7
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.2e-158 562.8 352 80.7
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.7e-158 562.0 374 78.1
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 8.2e-158 560.8 374 78.1
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 1.1e-157 560.5 376 75.8
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.1e-157 560.5 374 77.3
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 1.1e-157 560.5 367 78.2
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 1.1e-157 560.5 406 71.7
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 1.4e-157 560.1 374 75.4
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 1.4e-157 560.1 414 70.8
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.4e-157 560.1 352 80.4
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.4e-157 560.1 352 80.4
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 1.4e-157 560.1 376 77.1
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 1.8e-157 559.7 337 82.8
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 4.1e-157 558.5 360 77.5
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 7.0e-157 557.8 413 70.0
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 7.0e-157 557.8 364 77.5
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 7.0e-157 557.8 364 77.5
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.0e-157 557.8 357 79.8
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 9.1e-157 557.4 376 75.8
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 9.1e-157 557.4 374 77.3
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.9e-156 554.7 374 77.0
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 7.7e-156 554.3 374 74.6
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 1.0e-155 553.9 380 74.7
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 1.7e-155 553.1 373 74.3
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 2.9e-155 552.4 383 73.9
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 2.9e-155 552.4 374 75.1
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 3.8e-155 552.0 376 75.0
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 8.5e-155 550.8 373 76.4
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 1.1e-154 550.4 376 74.7
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 2.5e-154 549.3 370 76.5
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 3.2e-154 548.9 408 70.1
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 3.2e-154 548.9 375 74.7
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 4.2e-154 548.5 409 69.9
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 4.2e-154 548.5 370 75.1
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 9.4e-154 547.4 408 69.9
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 3.6e-153 545.4 366 76.2
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 3.6e-153 545.4 408 69.6
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 4.7e-153 545.0 408 69.6
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 8.0e-153 544.3 406 72.9
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 1.0e-152 543.9 398 71.1
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 1.0e-152 543.9 367 75.5
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 1.4e-152 543.5 391 71.6
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 8.8e-152 540.8 356 77.2
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 2.6e-151 539.3 346 76.6
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 9.8e-151 537.3 364 75.5
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 1.3e-150 537.0 346 76.6
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 2.8e-150 535.8 306 87.6
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 1.4e-149 533.5 352 76.1
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 7.0e-149 531.2 374 71.4
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 7.0e-149 531.2 356 75.0
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 7.0e-149 531.2 404 66.8
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 1.2e-148 530.4 505 59.2
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.2e-148 530.4 382 70.7
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 2.7e-148 529.3 368 72.3
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 5.0e-147 525.0 362 72.9
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 6.5e-147 524.6 337 76.0
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.1e-145 519.6 345 74.8
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 1.2e-143 513.8 358 70.7
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 1.4e-141 506.9 369 72.1
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 7.0e-141 504.6 371 70.1
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.0e-140 503.1 412 66.0
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 1.6e-137 493.4 373 66.5
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 8.0e-137 491.1 368 69.0
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 1.4e-136 490.3 347 70.9
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 4.4e-135 485.3 368 70.9
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 8.3e-134 481.1 408 63.7
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 1.3e-131 473.8 346 66.5
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 2.1e-129 466.5 284 82.0
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 3.1e-128 462.6 375 65.3
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.3e-110 404.1 414 55.6
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 2.3e-107 393.3 340 58.8
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 5.3e-96 355.5 312 63.8
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 9.3e-93 344.7 258 71.3
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 2.6e-71 273.5 204 70.1
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.3e-70 271.2 191 68.1
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.7e-70 270.8 160 81.9
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 3.1e-64 250.0 170 72.4
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.5e-63 247.7 170 74.1
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 2.6e-63 246.9 203 60.1
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 2.2e-54 217.2 267 48.7
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 2.2e-54 217.2 230 53.5
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.4e-48 197.2 205 53.2
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 8.5e-46 188.7 110 82.7
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 8.5e-46 188.7 110 81.8
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 6.1e-44 182.6 136 72.1
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 9.1e-40 168.7 354 33.6
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.7e-38 164.5 100 79.0
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 2.2e-38 164.1 353 32.0
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.1e-37 161.8 110 69.1
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.1e-37 161.8 119 68.1
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 4.4e-34 149.8 292 31.8
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 3.5e-31 140.2 268 32.8
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.2e-28 131.7 119 64.7
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.0e-27 128.6 160 50.0
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.4e-27 128.3 160 50.0
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 1.0e-22 112.1 210 31.9
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 3.8e-22 110.2 267 29.6
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 1.0e-19 102.1 78 66.7
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 2.6e-18 97.4 87 59.8
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.2e-15 88.6 60 75.0
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 1.6e-15 88.2 66 71.2
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 3.5e-15 87.0 80 63.8
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 3.5e-15 87.0 80 63.8
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 3.5e-15 87.0 204 29.9
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 7.8e-15 85.9 49 79.6
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 1.3e-14 85.1 62 64.5
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 1.3e-14 85.1 130 37.7
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 2.3e-14 84.3 51 74.5
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.5e-13 81.6 51 64.7
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 5.6e-13 79.7 69 59.4
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.8e-12 77.4 51 76.5
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.6e-12 77.0 53 75.5
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 4.7e-12 76.6 55 72.7
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 4.7e-12 76.6 50 78.0
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.1e-11 75.5 52 75.0
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 6.8e-11 72.8 48 77.1
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 6.8e-11 72.8 48 77.1
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 8.9e-11 72.4 85 49.4
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.5e-10 71.6 52 73.1
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 3.5e-07 60.5 38 78.9
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 6.0e-07 59.7 40 77.5


User provided reference genes

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