Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 4.0e-54 214.5 112 100.0
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 6.5e-44 180.6 99 97.0
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 7.2e-43 177.2 98 92.9
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 2.1e-42 175.6 98 93.9
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.8e-38 162.5 103 84.5
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 1.2e-34 149.8 98 80.6
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 4.7e-34 147.9 98 80.6
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 2.3e-33 145.6 98 78.6
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 5.7e-32 141.0 97 75.3
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 9.7e-32 140.2 97 76.3
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.8e-31 137.9 93 76.3
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 8.2e-31 137.1 99 76.8
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 8.2e-31 137.1 98 74.5
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 8.2e-31 137.1 93 76.3
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.8e-30 136.0 98 72.4
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 2.4e-30 135.6 99 72.7
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 4.1e-30 134.8 100 72.0
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 4.1e-30 134.8 97 73.2
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 5.3e-30 134.4 97 73.2
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 6.9e-30 134.0 100 73.0
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.5e-29 132.9 103 74.8
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 2.6e-29 132.1 98 71.4
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.6e-29 132.1 98 71.4
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.6e-29 132.1 98 71.4
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 3.4e-29 131.7 107 65.4
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.4e-29 131.7 98 71.4
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.4e-29 131.7 98 71.4
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.4e-29 131.7 98 71.4
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 3.4e-29 131.7 96 72.9
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 4.5e-29 131.3 97 73.2
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 7.7e-29 130.6 101 69.3
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.0e-28 130.2 98 71.4
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.0e-28 130.2 100 70.0
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.0e-28 130.2 100 70.0
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.0e-28 130.2 100 70.0
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.0e-28 130.2 101 69.3
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 1.3e-28 129.8 103 72.8
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-28 129.8 100 69.0
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-28 129.8 100 69.0
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.7e-28 129.4 98 68.4
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.7e-28 129.4 102 68.6
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.7e-28 129.4 100 70.0
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.2e-28 129.0 94 73.4
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.9e-28 128.6 96 70.8
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 2.9e-28 128.6 102 67.6
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 5.0e-28 127.9 96 69.8
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 6.5e-28 127.5 98 69.4
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 6.5e-28 127.5 100 72.0
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 8.5e-28 127.1 97 69.1
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 8.5e-28 127.1 96 69.8
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.4e-27 126.3 111 64.0
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.9e-27 125.9 98 65.3
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 2.5e-27 125.6 98 70.4
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 2.5e-27 125.6 96 72.9
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.2e-27 124.8 99 72.7
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.2e-27 124.8 99 72.7
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 4.2e-27 124.8 105 66.7
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 5.5e-27 124.4 96 69.8
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 7.2e-27 124.0 100 68.0
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.2e-26 123.2 97 67.0
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.6e-26 122.9 113 61.9
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.6e-26 122.9 103 67.0
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.1e-26 122.5 100 67.0
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.1e-26 122.5 103 65.0
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 6.1e-26 120.9 98 67.3
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 6.1e-26 120.9 104 64.4
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 8.0e-26 120.6 100 68.0
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 8.0e-26 120.6 103 66.0
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 8.0e-26 120.6 111 64.9
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.0e-25 120.2 103 65.0
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 1.4e-25 119.8 96 69.8
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.8e-25 119.4 105 61.9
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 1.8e-25 119.4 111 63.1
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.8e-25 119.4 103 65.0
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.3e-25 119.0 103 70.9
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.3e-25 119.0 100 67.0
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 3.0e-25 118.6 98 64.3
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 3.0e-25 118.6 97 66.0
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 3.9e-25 118.2 97 61.9
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 3.9e-25 118.2 98 66.3
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 3.9e-25 118.2 113 60.2
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 3.9e-25 118.2 101 66.3
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 5.2e-25 117.9 111 62.2
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 5.2e-25 117.9 100 64.0
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.8e-25 117.1 101 65.3
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.8e-25 117.1 101 65.3
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.8e-25 117.1 97 60.8
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 8.8e-25 117.1 103 61.2
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 8.8e-25 117.1 103 61.2
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 8.8e-25 117.1 103 61.2
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.1e-24 116.7 93 64.5
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.1e-24 116.7 101 71.3
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.1e-24 116.7 106 66.0
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.1e-24 116.7 97 62.9
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.0e-24 115.9 97 63.9
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 2.0e-24 115.9 101 65.3
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 2.6e-24 115.5 103 60.2
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 2.6e-24 115.5 106 66.0
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.6e-24 115.5 103 64.1
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 3.3e-24 115.2 107 64.5
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 4.4e-24 114.8 89 66.3
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 5.7e-24 114.4 99 64.6
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 9.7e-24 113.6 109 58.7
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.7e-24 113.6 103 64.1
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.3e-23 113.2 101 66.3
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.7e-23 112.8 102 61.8
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.7e-23 112.8 98 65.3
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 4.8e-23 111.3 108 60.2
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.8e-23 111.3 94 64.9
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 8.2e-23 110.5 95 63.2
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 3.1e-22 108.6 97 61.9
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 4.1e-22 108.2 91 62.6
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 4.1e-22 108.2 106 57.5
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 4.5e-21 104.8 96 61.5
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 7.7e-21 104.0 89 62.9
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 2.2e-20 102.4 100 60.0
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 2.9e-20 102.1 93 67.7
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.5e-19 99.8 87 62.1
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.6e-18 96.3 113 54.0
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 3.6e-18 95.1 90 57.8
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 3.6e-18 95.1 90 57.8
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 3.6e-18 95.1 90 57.8
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 4.7e-18 94.7 135 45.9
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.0e-17 93.6 102 57.8
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.0e-17 92.0 97 60.8
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 4.0e-17 91.7 90 55.6
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 4.0e-17 91.7 100 59.0
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 5.2e-17 91.3 67 67.2
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.2e-16 90.1 97 55.7
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.2e-16 90.1 96 51.0
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.6e-16 89.0 57 73.7
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 4.4e-16 88.2 112 53.6
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.7e-15 86.3 101 53.5
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 5.3e-14 81.3 88 58.0
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 9.1e-14 80.5 84 53.6
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.6e-13 79.7 96 49.0
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 5.9e-13 77.8 97 51.5
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.7e-12 76.3 47 78.7
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 8.5e-12 73.9 60 65.0
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.5e-11 73.2 47 74.5
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.2e-11 72.0 76 55.3
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.6e-10 69.7 103 46.6
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 3.6e-10 68.6 100 45.0
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.0e-09 67.0 83 54.2
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 7.5e-08 60.8 63 58.7
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 9.8e-08 60.5 96 41.7
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 5.4e-06 54.7 116 38.8
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 5.4e-06 54.7 102 43.1
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 9.1e-06 53.9 96 39.6


User provided reference genes

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