Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37608 Trifolium pratense HOM05D006567 ORTHO05D009430 7.3e-217 756.9 375 100.0
Medtr4g100760 Medicago truncatula HOM05D006567 ORTHO05D009430 1.7e-205 719.2 375 94.4
Psat4g072680 Pisum sativum HOM05D006567 ORTHO05D009430 2.1e-203 712.2 374 93.0
Lj4g0021343 Lotus japonicus HOM05D006567 ORTHO05D009430 1.2e-198 696.4 374 90.6
Ca_21975_v3 Cicer arietinum L. HOM05D006567 ORTHO05D009430 3.4e-198 694.9 368 92.7
VMungo0251G1330 Vigna mungo HOM05D006567 ORTHO05D009430 9.3e-196 686.8 368 89.9
Glyma.05G061300 Glycine max HOM05D006567 ORTHO05D009430 1.6e-195 686.0 368 89.4
arahy.Tifrunner.gnm1.ann1.69E4XE Arachis hypogaea HOM05D006567 ORTHO05D009430 2.7e-195 685.3 366 90.4
arahy.Tifrunner.gnm1.ann1.E0WBQ7 Arachis hypogaea HOM05D006567 ORTHO05D009430 2.7e-195 685.3 368 89.7
Lalb_Chr05g0221201 Lupinus albus HOM05D006567 ORTHO05D009430 4.3e-193 677.9 363 89.8
Phvul.003G221900 Phaseolus vulgaris HOM05D006567 ORTHO05D009430 1.1e-191 673.3 368 88.6
QL12p011664 Quercus lobata HOM05D006567 ORTHO05D009430 3.4e-190 668.3 369 87.5
TAR636G1533 Trochodendron aralioides HOM05D006567 ORTHO05D009430 3.9e-186 654.8 363 87.1
COL.COLO4_37145 Corchorus olitorius HOM05D006567 ORTHO05D009430 1.9e-185 652.5 362 85.6
MD04G1062400 Malus domestica HOM05D006567 ORTHO05D009430 9.7e-185 650.2 367 85.6
CANSAT21G0369 Cannabis sativa HOM05D006567 ORTHO05D009430 1.3e-184 649.8 367 85.6
Cfa015824 Carpinus fangiana HOM05D006567 ORTHO05D009430 1.3e-184 649.8 367 85.3
Sabra03G0048700 Salix brachista HOM05D006567 ORTHO05D009430 1.4e-183 646.4 369 82.9
RcHm_v2.0_Chr7g0203711 Rosa chinensis HOM05D006567 ORTHO05D009430 3.1e-183 645.2 370 84.9
FAN08G1209 Fragaria x ananassa HOM05D006567 ORTHO05D009430 9.0e-183 643.7 370 83.5
FAN18G0654 Fragaria x ananassa HOM05D006567 ORTHO05D009430 4.5e-182 641.3 368 83.4
Atru.chr9.1289 Acer truncatum HOM05D006567 ORTHO05D009430 5.9e-182 641.0 362 85.4
Potri.003G078500 Populus trichocarpa HOM05D006567 ORTHO05D009430 5.9e-182 641.0 361 84.5
PGR031G0713 Punica granatum HOM05D006567 ORTHO05D009430 1.3e-181 639.8 362 84.3
FAN04G2727 Fragaria x ananassa HOM05D006567 ORTHO05D009430 1.7e-181 639.4 369 83.2
Thecc.03G249000 Theobroma cacao HOM05D006567 ORTHO05D009430 2.2e-181 639.0 366 83.9
TWI81G0123 Tripterygium wilfordii HOM05D006567 ORTHO05D009430 5.0e-181 637.9 370 83.2
Duzib084G0744 Durio zibethinus HOM05D006567 ORTHO05D009430 6.5e-181 637.5 367 83.1
CSS0024870 Camellia sinensis var. sinensis HOM05D006567 ORTHO05D009430 1.1e-180 636.7 362 84.0
vmacro00188 Vaccinium macrocarpon HOM05D006567 ORTHO05D009430 1.2e-179 633.3 363 82.4
Gohir.D12G218600 Gossypium hirsutum HOM05D006567 ORTHO05D009430 1.6e-179 632.9 367 82.3
Gorai.008G234200 Gossypium raimondii HOM05D006567 ORTHO05D009430 1.6e-179 632.9 367 82.6
Ciclev10020637m.g Citrus clementina HOM05D006567 ORTHO05D009430 2.7e-179 632.1 369 81.6
SalBow6G6157 Salvia bowleyana HOM05D006567 ORTHO05D009430 3.6e-179 631.7 362 81.5
Actinidia14413 Actinidia chinensis HOM05D006567 ORTHO05D009430 4.6e-179 631.3 368 82.1
Aqoxy7G00822 Aquilegia oxysepala HOM05D006567 ORTHO05D009430 7.9e-179 630.6 361 82.8
Hund11604 Selenicereus undatus HOM05D006567 ORTHO05D009430 7.9e-179 630.6 370 81.1
MSTRG.12113 Avicennia marina HOM05D006567 ORTHO05D009430 1.4e-178 629.8 363 81.5
Cpa.g.sc29.179 Carica papaya HOM05D006567 ORTHO05D009430 1.8e-178 629.4 365 82.5
Cc08_g12240 Coffea canephora HOM05D006567 ORTHO05D009430 2.3e-178 629.0 370 80.5
Eucgr.D02095 Eucalyptus grandis HOM05D006567 ORTHO05D009430 2.3e-178 629.0 362 83.1
Gohir.A12G216000 Gossypium hirsutum HOM05D006567 ORTHO05D009430 3.0e-178 628.6 373 81.2
CsaV3_5G004320 Cucumis sativus L. HOM05D006567 ORTHO05D009430 5.1e-178 627.9 367 82.0
MBI04_g09522_MAGBIO Magnolia biondii HOM05D006567 ORTHO05D009430 5.1e-178 627.9 364 82.1
HanXRQChr13g0417851 Helianthus annuus HOM05D006567 ORTHO05D009430 1.5e-177 626.3 362 79.6
Nn1g00949 Nelumbo nucifera HOM05D006567 ORTHO05D009430 1.5e-177 626.3 362 82.0
MELO3C005521.2 Cucumis melo HOM05D006567 ORTHO05D009430 2.5e-177 625.5 364 82.1
ECA240G4587 Erigeron canadensis HOM05D006567 ORTHO05D009430 4.8e-176 621.3 361 79.8
Lsat_1_v5_gn_6_92541 Lactuca sativa HOM05D006567 ORTHO05D009430 2.4e-175 619.0 362 80.4
Peaxi162Scf00209g00122 Petunia axillaris HOM05D006567 ORTHO05D009430 5.3e-175 617.8 362 80.7
Haze_00669 Corylus avellana HOM05D006567 ORTHO05D009430 6.9e-175 617.5 398 77.6
DCAR_004966 Daucus carota HOM05D006567 ORTHO05D009430 1.2e-174 616.7 361 81.2
PGSC0003DMG400004822 Solanum tuberosum HOM05D006567 ORTHO05D009430 5.9e-174 614.4 362 80.1
Ah.12g054200 Amaranthus hybridus HOM05D006567 ORTHO05D006679 7.7e-174 614.0 360 81.4
EL10Ac5g12369 Beta vulgaris HOM05D006567 ORTHO05D009430 6.5e-173 610.9 361 81.7
Migut.A01121 Erythranthe guttata HOM05D006567 ORTHO05D009430 6.5e-173 610.9 363 80.4
EL10Ac5g12374 Beta vulgaris HOM05D006567 ORTHO05D009430 8.5e-173 610.5 361 81.7
Solyc08g078460.3 Solanum lycopersicum HOM05D006567 ORTHO05D009430 2.5e-172 609.0 362 79.3
Sopen08g026950 Solanum pennellii HOM05D006567 ORTHO05D009430 2.5e-172 609.0 362 79.3
CAN.G1178.26 Capsicum annuum HOM05D006567 ORTHO05D009430 9.4e-172 607.1 363 79.1
ClCG01G004160 Citrullus lanatus HOM05D006567 ORTHO05D009430 2.1e-171 605.9 376 78.5
AUR62019967 Chenopodium quinoa HOM05D006567 ORTHO05D009430 4.7e-171 604.7 352 81.8
PSO170G1323 Papaver somniferum HOM05D006567 ORTHO05D009430 1.4e-167 593.2 387 75.2
CARHR223980 Cardamine hirsuta HOM05D006567 ORTHO05D009430 2.6e-166 589.0 364 76.1
PSO017G4082 Papaver somniferum HOM05D006567 ORTHO05D009430 2.6e-166 589.0 380 76.1
SGA_v2.0_scaffold26G11306 Striga asiatica HOM05D006567 ORTHO05D009430 3.5e-166 588.6 374 75.9
Nitab4.5_0001381g0120 Nicotiana tabacum HOM05D006567 ORTHO05D009430 1.0e-165 587.0 364 77.2
A03p50390 Brassica napus HOM05D006567 ORTHO05D009430 1.1e-164 583.6 368 74.7
ATR0057G105 Amborella trichopoda HOM05D006567 ORTHO05D009430 2.5e-164 582.4 363 74.9
AT4G17370 Arabidopsis thaliana HOM05D006567 ORTHO05D009430 2.5e-164 582.4 364 75.8
BcaNung03466 Brassica carinata HOM05D006567 ORTHO05D009430 3.2e-164 582.0 366 75.1
BraA03t14129Z Brassica rapa HOM05D006567 ORTHO05D009430 4.2e-164 581.6 368 74.7
Carub.0007s2404 Capsella rubella HOM05D006567 ORTHO05D009430 7.2e-164 580.9 364 75.5
THA.LOC104806666 Tarenaya hassleriana HOM05D006567 ORTHO05D009430 7.2e-164 580.9 371 75.5
Thhalv10025513m.g Eutrema salsugineum HOM05D006567 ORTHO05D009430 2.1e-163 579.3 360 75.6
BolC7t45378H Brassica oleracea HOM05D006567 ORTHO05D009430 4.7e-163 578.2 366 74.6
Sp7g16810 Schrenkiella parvula HOM05D006567 ORTHO05D009430 2.6e-161 572.4 364 74.5
AL7G37340 Arabidopsis lyrata HOM05D006567 ORTHO05D009430 2.8e-160 568.9 375 73.3
Nitab4.5_0002289g0070 Nicotiana tabacum HOM05D006567 ORTHO05D009430 8.2e-160 567.4 363 75.2
HPP92_025881 Vanilla planifolia HOM05D006567 ORTHO05D009430 3.1e-159 565.5 366 73.5
AUR62007104 Chenopodium quinoa HOM05D006567 ORTHO05D009430 2.9e-157 558.9 357 76.5
Aa31LG1G23140 Aethionema arabicum HOM05D006567 ORTHO05D009430 1.5e-156 556.6 358 73.2
SEGI_34288 Sequoiadendron giganteum HOM05D006567 ORTHO05D009430 3.2e-156 555.4 363 73.3
unitig_899.g15594 Utricularia gibba HOM05D006567 ORTHO05D009430 6.1e-155 551.2 361 73.4
CiPaw.11G081200 Carya illinoinensis HOM05D006567 ORTHO05D009430 1.2e-150 537.0 300 87.0
Os08g0148267 Oryza sativa ssp. japonica HOM05D006567 ORTHO05D009430 6.8e-146 521.2 303 82.8
Manes.01G082300 Manihot esculenta HOM05D006567 ORTHO05D009430 2.2e-144 516.2 284 88.0
Prupe.5G066000 Prunus persica HOM05D006567 ORTHO05D009430 1.3e-141 506.9 272 88.6
Dinv39160 Davidia involucrata HOM05D006567 ORTHO05D009430 3.8e-141 505.4 284 85.2
AagrBONN_evm.TU.Sc2ySwM_228.3639 Anthoceros agrestis HOM05D006567 ORTHO05D009430 1.1e-140 503.8 366 65.8
SMO228G0171 Selaginella moellendorffii HOM05D006567 ORTHO05D009430 2.6e-137 492.7 366 66.1
Mapoly0040s0044 Marchantia polymorpha HOM05D006567 ORTHO05D009430 1.0e-133 480.7 362 63.5
Sed0022818 Sechium edule HOM05D006567 ORTHO05D009430 2.9e-133 479.2 272 84.2
Pp3c4_15440 Physcomitrium patens HOM05D006567 ORTHO05D009430 6.6e-133 478.0 369 63.1
Zm00001eb416490 Zea mays HOM05D006567 ORTHO05D009430 1.7e-128 463.4 306 73.9
Lj2C221T14 Lonicera japonica HOM05D006567 ORTHO05D009430 1.2e-115 420.6 241 84.2
GSVIVG01004725001 Vitis vinifera HOM05D006567 ORTHO05D009430 3.1e-114 416.0 227 86.8
FvH4_5g19170 Fragaria vesca HOM05D006567 ORTHO05D009430 1.7e-112 410.2 229 83.0
Sc07g0009260 Simmondsia chinensis HOM05D006567 ORTHO05D009430 4.6e-110 402.1 223 84.8
Rhsim09G0000200 Rhododendron simsii HOM05D006567 ORTHO05D009430 6.6e-109 398.3 416 52.4
Glyma.17G143100 Glycine max HOM05D006567 ORTHO05D009430 1.4e-87 327.4 184 84.8
BcaC06g33541 Brassica carinata HOM05D006567 ORTHO05D009430 7.4e-68 261.9 212 61.8
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 6.7e-53 212.2 121 82.6
QL08p052096 Quercus lobata HOM05D006567 ORTHO05D015939 1.1e-52 211.5 119 82.4
FvH4_5g07380 Fragaria vesca HOM05D006567 ORTHO05D015939 9.1e-50 201.8 121 76.0
FvH4_3g36620 Fragaria vesca HOM05D006567 ORTHO05D015939 1.6e-46 191.0 124 75.0
FAN04G0922 Fragaria x ananassa HOM05D006567 ORTHO05D015939 8.0e-46 188.7 132 68.9
FAN09G0929 Fragaria x ananassa HOM05D006567 ORTHO05D015939 2.3e-45 187.2 119 73.1
FAN22G0783 Fragaria x ananassa HOM05D006567 ORTHO05D015939 2.3e-45 187.2 119 73.1
FAN27G0484 Fragaria x ananassa HOM05D006567 ORTHO05D015939 6.3e-43 179.1 132 66.7
Rhsim09G0000100 Rhododendron simsii HOM05D006567 ORTHO05D009430 1.8e-34 151.0 95 77.9
BcaC06g33542 Brassica carinata HOM05D006567 ORTHO05D015939 1.3e-32 144.8 94 70.2
FAN28G1973 Fragaria x ananassa HOM05D006567 ORTHO05D015939 6.4e-19 99.4 92 57.6
TPR.G40300 Trifolium pratense HOM05D006567 ORTHO05D412752 1.5e-15 88.2 54 79.6
TPR.G24425 Trifolium pratense HOM05D006567 ORTHO05D411483 2.5e-15 87.4 54 77.8
TPR.G2696 Trifolium pratense HOM05D006567 ORTHO05D411767 3.3e-15 87.0 54 79.6
TPR.G2679 Trifolium pratense HOM05D006567 ORTHO05D412848 1.8e-13 81.3 54 74.1
Pp3s96_60 Physcomitrium patens HOM05D016182 ORTHO05D028865 9.8e-12 75.5 279 25.4
AL7G37260 Arabidopsis lyrata HOM05D006567 ORTHO05D015939 8.6e-08 62.4 43 65.1
EL10Ac4g09527 Beta vulgaris HOM05D006567 ORTHO05D010541 1.1e-07 62.0 64 50.0
Ca_29050_v3 Cicer arietinum L. HOM05D006567 ORTHO05D018939 1.5e-07 61.6 206 27.2


User provided reference genes

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