Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 1.1e-92 343.2 166 100.0
TPR.G3774 Trifolium pratense HOM05D025391 ORTHO05D030167 5.4e-63 244.6 153 81.0
TPR.G18302 Trifolium pratense HOM05D025391 ORTHO05D030167 2.4e-34 149.4 82 85.4
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.2e-16 89.7 41 97.6
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 2.9e-16 89.4 42 92.9
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 2.9e-16 89.4 42 92.9
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 2.9e-16 89.4 42 92.9
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 2.9e-16 89.4 42 92.9
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 2.9e-16 89.4 42 92.9
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 2.9e-16 89.4 42 92.9
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 5.0e-16 88.6 41 95.1
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 8.5e-16 87.8 41 92.7
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 8.5e-16 87.8 41 92.7
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.1e-15 87.4 41 92.7
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 1.1e-15 87.4 42 88.1
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.1e-15 87.4 41 92.7
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 1.9e-15 86.7 41 90.2
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 1.9e-15 86.7 41 90.2
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 1.9e-15 86.7 41 90.2
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 2.5e-15 86.3 42 88.1
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 2.5e-15 86.3 41 90.2
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 2.5e-15 86.3 41 90.2
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 2.5e-15 86.3 41 90.2
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 2.5e-15 86.3 41 90.2
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 2.5e-15 86.3 41 90.2
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 2.5e-15 86.3 108 42.6
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 3.2e-15 85.9 42 85.7
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 3.2e-15 85.9 42 85.7
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 3.2e-15 85.9 42 85.7
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 3.2e-15 85.9 41 87.8
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 3.2e-15 85.9 42 85.7
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 3.2e-15 85.9 41 90.2
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 4.2e-15 85.5 42 85.7
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 4.2e-15 85.5 42 85.7
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.2e-15 85.5 42 85.7
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.2e-15 85.5 42 85.7
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.2e-15 85.5 42 85.7
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.2e-15 85.5 42 85.7
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 4.2e-15 85.5 42 85.7
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 4.2e-15 85.5 42 85.7
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 4.2e-15 85.5 41 87.8
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 4.2e-15 85.5 41 87.8
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 5.5e-15 85.1 52 69.2
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 5.5e-15 85.1 41 87.8
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 7.2e-15 84.7 42 83.3
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 7.2e-15 84.7 42 83.3
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 7.2e-15 84.7 42 83.3
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 7.2e-15 84.7 42 85.7
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 7.2e-15 84.7 42 85.7
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 7.2e-15 84.7 42 85.7
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 7.2e-15 84.7 42 85.7
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 7.2e-15 84.7 42 85.7
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 7.2e-15 84.7 42 85.7
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 7.2e-15 84.7 42 85.7
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 7.2e-15 84.7 42 85.7
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 7.2e-15 84.7 41 87.8
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 7.2e-15 84.7 42 88.1
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 9.4e-15 84.3 41 87.8
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 9.4e-15 84.3 41 87.8
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 9.4e-15 84.3 41 87.8
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 9.4e-15 84.3 41 87.8
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 1.2e-14 84.0 41 87.8
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 1.2e-14 84.0 41 87.8
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 1.2e-14 84.0 41 85.4
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 1.2e-14 84.0 39 92.3
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 1.6e-14 83.6 42 83.3
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 1.6e-14 83.6 41 85.4
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 1.6e-14 83.6 42 83.3
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 2.1e-14 83.2 108 40.7
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 2.1e-14 83.2 108 40.7
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 2.1e-14 83.2 108 40.7
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 2.1e-14 83.2 108 40.7
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 2.1e-14 83.2 108 40.7
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 2.1e-14 83.2 52 71.2
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 2.1e-14 83.2 42 83.3
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 2.1e-14 83.2 41 92.7
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 2.7e-14 82.8 41 82.9
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 2.7e-14 82.8 42 81.0
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 2.7e-14 82.8 41 82.9
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 2.7e-14 82.8 41 85.4
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 2.7e-14 82.8 42 88.1
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 3.6e-14 82.4 41 82.9
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 3.6e-14 82.4 42 81.0
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 3.6e-14 82.4 42 81.0
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 6.1e-14 81.6 42 81.0
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 6.1e-14 81.6 42 78.6
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 6.1e-14 81.6 42 81.0
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 6.1e-14 81.6 42 81.0
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 6.1e-14 81.6 42 81.0
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 6.1e-14 81.6 42 81.0
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 7.9e-14 81.3 42 83.3
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 7.9e-14 81.3 42 85.7
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.4e-13 80.5 41 82.9
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.4e-13 80.5 42 83.3
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.8e-13 80.1 41 75.6
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.3e-13 79.7 42 76.2
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 2.3e-13 79.7 52 61.5
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 2.3e-13 79.7 41 80.5
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 3.0e-13 79.3 42 83.3
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 3.0e-13 79.3 54 61.1
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 3.0e-13 79.3 42 83.3
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 3.0e-13 79.3 42 78.6
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 3.9e-13 79.0 42 78.6
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 3.9e-13 79.0 42 83.3
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 5.1e-13 78.6 42 81.0
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 5.1e-13 78.6 42 81.0
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 6.7e-13 78.2 40 87.5
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 8.8e-13 77.8 41 80.5
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 1.1e-12 77.4 42 83.3
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.1e-12 77.4 41 80.5
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.5e-12 77.0 42 81.0
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 2.0e-12 76.6 42 71.4
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 2.5e-12 76.3 41 80.5
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 2.5e-12 76.3 39 82.1
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 4.3e-12 75.5 42 76.2
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 4.3e-12 75.5 41 78.0
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 7.4e-12 74.7 42 73.8
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 7.4e-12 74.7 41 80.5
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.1e-10 70.9 42 76.2
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.1e-10 70.9 39 71.8
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 1.1e-10 70.9 39 71.8
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.1e-10 70.9 39 71.8
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 3.1e-10 69.3 42 66.7
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 1.2e-09 67.4 62 54.8
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 2.5e-07 59.7 32 78.1
Medtr1g046810 Medicago truncatula HOM05D042502 ORTHO05D017834 2.5e-07 59.7 173 34.7
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 2.1e-06 56.6 40 55.0


User provided reference genes

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