Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 5.9e-144 514.2 266 100.0
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 1.5e-123 446.4 267 87.6
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 2.8e-106 389.0 264 76.5
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 1.7e-103 379.8 264 75.8
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 3.8e-103 378.6 262 76.7
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 9.5e-102 374.0 266 74.8
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 7.5e-99 364.4 210 84.3
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 9.8e-99 364.0 218 81.2
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.4e-97 360.1 265 72.8
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 1.8e-97 359.8 211 82.0
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 3.2e-97 359.0 241 75.1
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 4.1e-97 358.6 228 77.6
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 1.2e-96 357.1 214 81.8
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.0e-95 354.0 210 81.4
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 1.3e-95 353.6 210 82.9
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 8.6e-95 350.9 210 81.0
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-93 347.1 226 76.1
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 1.6e-93 346.7 239 73.6
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 2.1e-93 346.3 276 68.1
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.7e-93 345.1 230 75.2
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 6.2e-93 344.7 273 67.4
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 1.4e-92 343.6 231 80.1
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 4.0e-92 342.0 212 79.7
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 5.2e-92 341.7 216 76.4
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 5.2e-92 341.7 227 76.2
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 5.2e-92 341.7 227 76.2
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 5.2e-92 341.7 227 76.2
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 6.8e-92 341.3 208 80.3
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 1.2e-91 340.5 213 79.3
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 1.2e-91 340.5 211 79.6
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 2.6e-91 339.3 212 78.8
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 2.6e-91 339.3 212 78.8
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 7.5e-91 337.8 222 76.6
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 2.2e-90 336.3 233 72.5
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 1.4e-89 333.6 212 78.3
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 1.4e-89 333.6 266 65.8
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 7.0e-89 331.3 218 75.7
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 9.2e-89 330.9 203 79.8
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.0e-88 329.7 196 80.1
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 4.6e-88 328.6 211 74.4
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 6.6e-87 324.7 229 72.9
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 8.6e-87 324.3 211 76.3
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 1.9e-86 323.2 209 78.0
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 2.5e-86 322.8 276 60.9
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 3.3e-86 322.4 248 67.3
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 4.3e-86 322.0 210 75.7
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 5.6e-86 321.6 211 75.8
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 9.5e-86 320.9 209 77.5
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.1e-85 319.7 210 75.2
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 3.6e-85 318.9 213 71.8
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 4.7e-85 318.5 211 73.0
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.1e-84 317.4 210 76.2
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.8e-84 316.6 223 70.9
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.8e-84 316.6 212 74.1
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 1.8e-84 316.6 270 64.8
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 2.3e-84 316.2 232 69.8
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 6.8e-84 314.7 210 74.8
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.8e-84 314.7 186 81.2
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 8.9e-84 314.3 213 72.3
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.2e-83 313.9 211 73.5
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 1.2e-83 313.9 212 73.1
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-83 313.9 212 73.1
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.2e-83 313.9 270 65.2
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 1.5e-83 313.5 209 74.2
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 4.4e-83 312.0 214 70.6
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 4.4e-83 312.0 241 67.6
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 5.8e-83 311.6 212 74.1
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 9.9e-83 310.8 212 72.6
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 1.7e-82 310.1 210 73.8
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 2.9e-82 309.3 232 68.1
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 2.9e-82 309.3 226 69.9
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 8.3e-82 307.8 236 64.0
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 1.9e-81 306.6 209 72.2
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 5.4e-81 305.1 235 66.8
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 7.1e-81 304.7 181 82.3
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 7.1e-81 304.7 213 70.9
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 9.2e-81 304.3 217 69.6
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 1.2e-80 303.9 209 71.8
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 2.7e-80 302.8 232 67.2
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 3.5e-80 302.4 209 71.3
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 7.8e-80 301.2 269 61.0
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 1.3e-79 300.4 283 59.4
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 6.6e-79 298.1 229 69.0
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 1.9e-78 296.6 210 68.6
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 1.2e-77 293.9 213 67.6
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 3.6e-77 292.4 206 69.9
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 2.4e-76 289.7 209 69.9
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 6.8e-76 288.1 266 59.8
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.4e-75 285.4 259 60.6
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 4.4e-75 285.4 211 66.8
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 5.8e-75 285.0 231 68.0
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 4.9e-74 282.0 231 62.8
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 8.4e-74 281.2 214 65.4
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 2.4e-73 279.6 236 60.6
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.7e-72 276.2 199 69.3
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 3.5e-72 275.8 241 61.4
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 7.8e-72 274.6 181 77.3
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 2.3e-71 273.1 180 73.9
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 3.0e-71 272.7 236 60.6
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 3.3e-70 269.2 211 63.0
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 8.1e-69 264.6 149 81.2
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 6.6e-63 245.0 212 59.0
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 4.5e-59 232.3 155 78.1
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 4.8e-53 212.2 137 85.4
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 1.5e-51 207.2 116 82.8
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 3.8e-50 202.6 146 72.6
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 8.4e-50 201.4 140 83.6
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.1e-49 201.1 134 75.4
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 7.9e-48 194.9 262 44.3
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 8.7e-47 191.4 182 57.1
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 4.3e-38 162.5 176 48.9
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 2.5e-33 146.7 150 58.0
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 7.4e-30 135.2 100 68.0
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 2.2e-29 133.7 181 42.0
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.8e-28 130.6 179 45.8
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 1.1e-25 121.3 70 80.0
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.7e-22 109.0 84 67.9
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 1.8e-20 104.0 125 50.4
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 2.9e-18 96.7 133 39.1
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 5.0e-18 95.9 132 40.9
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 1.2e-16 91.3 78 65.4
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 1.4e-15 87.8 55 74.5
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 8.2e-13 78.6 47 83.0
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.7e-10 70.9 138 35.5
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 5.5e-09 65.9 187 31.6
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 9.4e-09 65.1 140 32.9
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 9.4e-09 65.1 56 62.5
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.7e-08 63.5 202 30.7
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 8.0e-08 62.0 154 29.9
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 1.0e-07 61.6 55 56.4
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.4e-07 61.2 146 34.2
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.3e-07 60.5 156 31.4
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.3e-07 60.5 134 33.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 3.0e-07 60.1 139 33.1
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 4.0e-07 59.7 142 33.8
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 8.8e-07 58.5 171 30.4
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.2e-06 58.2 154 29.2
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.5e-06 57.8 113 32.7
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 2.0e-06 57.4 136 28.7
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 7.5e-06 55.5 113 31.0


User provided reference genes

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