Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 2.7e-278 961.4 516 100.0
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 2.3e-229 798.9 523 83.0
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 4.4e-196 688.3 519 73.0
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 5.0e-192 674.9 495 76.0
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 2.5e-191 672.5 523 71.9
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 5.4e-186 654.8 526 73.0
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 4.6e-185 651.7 522 71.1
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 2.8e-182 642.5 520 70.6
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 1.5e-175 620.2 517 68.5
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 1.5e-175 620.2 521 68.5
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 5.1e-168 595.1 528 66.1
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.9e-167 593.2 526 64.4
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.1e-162 577.4 360 87.8
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 3.6e-158 562.4 512 63.9
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 2.3e-152 543.1 517 62.5
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.0e-148 530.0 524 56.9
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.1e-145 520.0 529 56.3
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 2.1e-145 520.0 484 62.8
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 2.3e-144 516.5 524 57.6
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 5.1e-144 515.4 564 56.7
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.1e-141 507.7 525 56.4
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 3.4e-140 502.7 534 56.0
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 4.5e-140 502.3 532 54.5
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.2e-139 500.0 525 55.6
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 4.2e-138 495.7 516 55.8
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 9.3e-138 494.6 537 54.9
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 3.5e-137 492.7 510 56.9
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.0e-136 491.1 547 53.4
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.0e-136 489.6 503 56.1
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.9e-136 489.2 488 57.2
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 5.7e-135 485.3 529 55.0
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.3e-134 484.2 489 56.6
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 2.8e-134 483.0 489 56.4
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.8e-134 483.0 489 56.4
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 2.6e-132 476.5 493 56.8
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 5.9e-132 475.3 518 55.4
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.3e-131 474.2 517 54.9
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 1.7e-131 473.8 538 55.6
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.4e-130 470.7 511 55.2
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 3.2e-130 469.5 523 53.5
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.7e-129 466.5 534 52.2
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 3.6e-129 466.1 525 53.0
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 6.1e-129 465.3 494 54.9
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 6.1e-129 465.3 522 53.3
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 3.0e-128 463.0 525 54.1
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 5.1e-128 462.2 523 53.2
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.1e-127 461.1 530 53.0
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 4.3e-127 459.1 537 52.0
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 5.7e-127 458.8 539 52.3
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 5.7e-127 458.8 471 55.8
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 3.7e-126 456.1 531 52.7
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 8.2e-126 454.9 616 47.4
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 1.4e-125 454.1 530 51.5
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 2.4e-125 453.4 535 52.7
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 6.9e-125 451.8 520 54.4
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.5e-124 450.7 522 54.6
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.6e-124 449.9 535 53.3
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.0e-123 448.0 534 51.9
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.0e-123 448.0 516 52.9
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.7e-123 447.2 522 53.6
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 1.7e-123 447.2 514 52.5
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 5.0e-123 445.7 491 53.4
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.2e-122 443.0 519 52.6
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 3.2e-122 443.0 505 53.1
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.2e-121 441.0 538 50.4
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 6.1e-121 438.7 525 51.8
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.1e-120 435.6 491 53.6
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 2.0e-119 433.7 552 48.6
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 7.4e-119 431.8 532 51.5
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.8e-118 429.9 528 50.4
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 3.7e-118 429.5 532 51.5
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 4.8e-118 429.1 508 50.4
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 6.3e-118 428.7 474 53.6
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.2e-116 424.5 493 54.4
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 5.0e-115 419.1 516 49.8
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 6.5e-115 418.7 490 50.8
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.3e-112 410.2 485 51.1
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 5.2e-112 409.1 547 48.1
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 5.2e-112 409.1 508 51.8
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 3.7e-110 402.9 517 50.3
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 6.3e-110 402.1 521 48.6
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.4e-109 401.0 525 50.7
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.8e-109 400.6 540 47.4
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 2.2e-107 393.7 535 47.9
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 5.0e-107 392.5 427 52.7
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 1.5e-106 391.0 527 48.2
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 2.5e-106 390.2 526 48.5
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 2.5e-106 390.2 548 46.5
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 7.2e-106 388.7 538 46.5
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 1.2e-105 387.9 489 48.9
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 2.1e-105 387.1 502 49.0
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 2.7e-105 386.7 517 48.0
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 2.7e-105 386.7 525 48.6
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 3.6e-105 386.3 529 48.2
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 4.7e-105 386.0 520 46.3
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 6.1e-105 385.6 524 46.4
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 6.1e-105 385.6 534 46.3
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.0e-104 384.8 531 46.1
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 2.3e-104 383.6 503 48.7
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 5.2e-104 382.5 519 48.2
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 6.7e-104 382.1 521 47.8
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 8.8e-104 381.7 516 47.1
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 1.2e-103 381.3 519 48.0
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.0e-103 380.6 505 48.1
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 1.7e-102 377.5 419 55.4
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 2.2e-102 377.1 509 46.8
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.1e-101 374.8 538 46.8
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 3.1e-101 373.2 534 46.4
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 4.1e-101 372.9 538 46.7
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 1.2e-100 371.3 315 72.1
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 1.6e-100 370.9 522 47.1
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.7e-99 367.5 512 47.1
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 4.2e-98 362.8 540 45.2
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 5.5e-98 362.5 537 45.3
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.1e-97 360.5 504 47.0
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 2.0e-95 354.0 524 46.6
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 7.5e-95 352.1 475 47.8
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.1e-93 348.2 504 45.2
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 2.4e-93 347.1 519 45.7
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.1e-90 338.2 362 55.0
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.4e-88 331.3 505 43.8
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.2e-88 329.3 508 43.1
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 8.9e-88 328.6 487 45.2
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.7e-86 324.3 382 49.2
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.1e-81 307.4 477 43.2
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 2.8e-81 307.0 373 50.9
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 6.1e-81 305.8 547 41.7
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 9.8e-79 298.5 438 45.0
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 1.6e-76 291.2 434 44.5
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 6.0e-76 289.3 475 44.0
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 2.3e-75 287.3 455 43.5
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 5.0e-75 286.2 377 48.0
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 6.6e-75 285.8 474 42.6
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 7.3e-74 282.3 503 41.2
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 2.4e-69 267.3 570 36.7
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 5.4e-69 266.2 486 40.1
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 4.7e-65 253.1 401 41.4
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 6.4e-62 242.7 252 55.2
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 7.1e-61 239.2 396 41.9
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 1.6e-60 238.0 310 50.0
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 3.0e-59 233.8 276 50.0
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 6.6e-59 232.6 396 43.2
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 2.1e-57 227.6 246 57.3
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.6e-52 211.5 387 39.3
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 3.9e-51 206.8 390 38.5
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 6.6e-51 206.1 390 37.9
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 3.3e-50 203.8 464 36.0
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 1.3e-49 201.8 233 50.6
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 5.3e-48 196.4 489 35.4
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 7.8e-44 182.6 463 34.6
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.3e-41 175.3 511 31.9
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.2e-37 160.2 262 42.7
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.6e-36 158.3 190 50.5
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 2.7e-36 157.5 547 31.3
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 1.1e-32 145.6 191 51.3
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.5e-31 141.7 481 31.6
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.0e-30 139.0 249 39.0
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.3e-30 138.7 204 45.6
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 1.5e-26 125.2 259 35.5
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 5.7e-26 123.2 209 40.2
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 1.8e-24 118.2 299 32.1
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.1e-24 117.5 298 32.6
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 9.0e-24 115.9 128 57.0
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 2.6e-23 114.4 154 46.1
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.9e-22 110.9 121 56.2
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.1e-21 109.0 109 56.0
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 7.1e-21 106.3 142 46.5
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.3e-17 95.5 110 50.0
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.6e-17 95.1 195 39.0
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 6.3e-17 93.2 86 61.6
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 5.5e-13 80.1 70 60.0
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 5.1e-11 73.6 88 54.5
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.4e-08 65.5 91 46.2
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 3.1e-08 64.3 67 47.8
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 3.4e-07 60.8 44 65.9
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 4.5e-07 60.5 69 50.7
Psat4g080800 Pisum sativum HOM05D003929 ORTHO05D004499 6.5e-06 56.6 50 68.0


User provided reference genes

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