Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 3.4e-77 291.6 147 100.0
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 1.2e-58 229.9 143 83.2
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 6.1e-58 227.6 141 85.1
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 2.7e-42 175.6 140 67.1
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 8.0e-42 174.1 149 63.1
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 4.4e-40 168.3 131 69.5
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 1.3e-39 166.8 143 62.9
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 2.5e-35 152.5 150 56.0
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 2.0e-32 142.9 139 56.1
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 9.7e-32 140.6 129 62.0
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 1.3e-31 140.2 149 56.4
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 2.2e-31 139.4 143 56.6
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 4.8e-31 138.3 137 56.9
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 1.1e-30 137.1 137 54.7
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 2.4e-30 136.0 137 54.7
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 3.1e-30 135.6 138 54.3
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 2.0e-29 132.9 135 56.3
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 3.5e-29 132.1 110 62.7
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 1.0e-28 130.6 142 50.0
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 2.2e-28 129.4 137 52.6
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 2.9e-28 129.0 137 54.0
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 3.8e-28 128.6 143 52.4
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 6.5e-28 127.9 142 52.8
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 8.5e-28 127.5 132 53.8
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 1.5e-27 126.7 143 52.4
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 1.9e-27 126.3 141 53.9
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 3.2e-27 125.6 126 55.6
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 3.2e-27 125.6 147 46.9
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 4.2e-27 125.2 141 51.8
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 7.2e-27 124.4 130 54.6
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 9.4e-27 124.0 144 51.4
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 9.4e-27 124.0 138 50.0
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 2.1e-26 122.9 145 50.3
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 2.7e-26 122.5 145 50.3
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 2.7e-26 122.5 149 47.7
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 2.7e-26 122.5 151 50.3
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 3.6e-26 122.1 139 52.5
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 3.6e-26 122.1 148 50.0
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 3.6e-26 122.1 148 49.3
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 4.7e-26 121.7 149 51.0
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 8.0e-26 120.9 144 50.0
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 8.0e-26 120.9 134 53.7
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 8.0e-26 120.9 139 50.4
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 1.4e-25 120.2 153 47.1
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 1.8e-25 119.8 145 52.4
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 2.3e-25 119.4 145 49.7
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 3.0e-25 119.0 151 47.7
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 3.0e-25 119.0 145 49.7
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 5.2e-25 118.2 148 46.6
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 6.8e-25 117.9 130 51.5
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 6.8e-25 117.9 145 49.0
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 2.6e-24 115.9 140 49.3
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 5.7e-24 114.8 138 48.6
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 5.7e-24 114.8 130 50.0
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 7.5e-24 114.4 128 50.8
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 1.3e-23 113.6 132 47.0
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 1.3e-23 113.6 141 49.6
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 6.3e-23 111.3 136 48.5
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 8.3e-23 110.9 149 45.6
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 1.1e-22 110.5 126 52.4
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 4.1e-22 108.6 105 55.2
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 4.1e-22 108.6 143 50.3
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 4.1e-22 108.6 152 46.1
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 5.4e-22 108.2 128 47.7
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 1.6e-21 106.7 137 47.4
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 2.7e-21 105.9 142 45.8
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 3.5e-21 105.5 140 46.4
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 5.9e-21 104.8 134 47.0
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 5.9e-21 104.8 130 46.2
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 7.7e-21 104.4 133 45.9
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 1.0e-20 104.0 125 47.2
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 1.0e-20 104.0 134 46.3
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 1.3e-20 103.6 139 44.6
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 1.7e-20 103.2 132 50.8
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 2.9e-20 102.4 141 47.5
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 6.6e-20 101.3 115 51.3
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 3.3e-19 99.0 133 48.1
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 9.5e-19 97.4 118 49.2
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 3.0e-17 92.4 122 45.1
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 5.7e-16 88.2 105 47.6
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 1.3e-15 87.0 127 43.3
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.3e-15 87.0 148 42.6
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.3e-15 87.0 148 42.6
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.3e-15 87.0 149 43.0
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 1.7e-15 86.7 128 43.0
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 1.7e-15 86.7 109 45.9
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 2.2e-15 86.3 131 44.3
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 2.2e-15 86.3 124 43.5
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 2.8e-15 85.9 131 44.3
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 3.7e-15 85.5 129 44.2
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 3.7e-15 85.5 138 36.2
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 4.9e-15 85.1 129 44.2
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 6.3e-15 84.7 129 42.6
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 8.3e-15 84.3 128 44.5
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 3.1e-14 82.4 128 43.8
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 5.4e-14 81.6 128 39.1
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 1.6e-13 80.1 130 42.3
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 1.6e-13 80.1 81 53.1
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 3.5e-13 79.0 122 43.4
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 4.5e-13 78.6 134 40.3
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 7.8e-13 77.8 130 40.0
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 1.0e-12 77.4 130 40.0
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 2.3e-12 76.3 82 50.0
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 5.0e-12 75.1 130 38.5
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 1.6e-10 70.1 150 38.7
Duzib068G0261 Durio zibethinus HOM05D007505 ORTHO05D009476 2.8e-10 69.3 63 54.0
Os02g0595200 Oryza sativa ssp. japonica HOM05D007505 ORTHO05D009476 8.9e-09 64.3 167 33.5
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 1.2e-08 63.9 127 36.2
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 1.3e-07 60.5 86 40.7
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 1.4e-06 57.0 133 33.8
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 1.4e-06 57.0 135 32.6
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 4.1e-06 55.5 136 33.8
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 4.1e-06 55.5 133 33.1


User provided reference genes

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