Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.8e-190 669.1 339 100.0
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 7.0e-158 560.8 339 82.9
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 6.7e-153 544.3 339 80.8
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.9e-147 526.2 330 79.1
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 4.0e-129 465.3 339 69.6
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 2.3e-121 439.5 339 65.8
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 2.0e-120 436.4 339 65.5
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.1e-117 426.4 341 66.0
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 2.8e-114 416.0 332 65.1
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 4.7e-114 415.2 339 62.8
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 9.2e-110 401.0 340 60.6
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 5.1e-108 395.2 340 59.4
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 9.5e-107 391.0 340 59.7
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 2.4e-105 386.3 340 59.4
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 6.8e-105 384.8 339 58.1
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 9.9e-104 380.9 339 57.5
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 6.6e-100 368.2 339 56.3
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 9.6e-99 364.4 340 55.6
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.2e-96 357.5 340 56.5
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 2.6e-96 356.3 339 55.5
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 2.2e-95 353.2 340 53.2
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 5.4e-94 348.6 350 52.9
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 5.1e-92 342.0 340 52.4
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 4.3e-91 339.0 340 52.9
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 7.3e-91 338.2 342 52.3
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 4.8e-90 335.5 344 52.0
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 1.8e-89 333.6 344 51.2
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 2.4e-89 333.2 343 51.0
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 7.6e-88 328.2 344 51.2
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 4.9e-87 325.5 345 51.3
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 6.4e-87 325.1 344 47.7
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.4e-86 323.9 343 49.6
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 5.4e-86 322.0 336 50.0
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 9.3e-86 321.2 344 47.7
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.6e-85 320.5 344 50.6
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 7.9e-85 318.2 343 51.0
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.3e-84 317.4 340 50.3
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 5.1e-84 315.5 340 50.6
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 5.6e-83 312.0 343 50.1
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.4e-83 311.6 344 48.0
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 9.6e-83 311.2 344 47.7
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.3e-82 310.8 342 50.3
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 4.8e-82 308.9 346 50.6
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.8e-82 308.9 344 47.4
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 6.2e-82 308.5 343 49.0
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.1e-81 307.8 340 48.2
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.4e-81 306.6 343 50.4
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 4.0e-81 305.8 345 48.7
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 5.3e-81 305.4 342 49.7
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 5.3e-81 305.4 344 47.7
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.2e-80 304.3 341 49.9
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 3.4e-80 302.8 344 48.8
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.7e-79 300.4 344 48.3
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.2e-79 300.1 344 45.1
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 2.9e-79 299.7 341 48.4
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 8.4e-79 298.1 345 50.4
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 2.5e-78 296.6 346 47.7
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.5e-78 295.4 343 47.5
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 1.2e-77 294.3 346 47.4
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 4.6e-77 292.4 340 48.5
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 4.6e-77 292.4 347 49.0
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 6.0e-77 292.0 348 47.7
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 1.3e-76 290.8 343 48.1
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.3e-76 290.8 288 52.8
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.8e-76 290.4 342 48.0
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.8e-76 290.4 349 47.0
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 2.3e-76 290.0 346 48.3
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 3.9e-76 289.3 342 47.1
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 6.7e-76 288.5 355 46.5
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 8.7e-76 288.1 326 49.1
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 8.7e-76 288.1 343 48.1
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.5e-75 286.6 343 48.1
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 5.6e-75 285.4 342 46.5
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 5.6e-75 285.4 343 47.5
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 2.1e-74 283.5 346 46.2
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.8e-74 283.1 343 47.8
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 3.7e-74 282.7 326 48.8
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 3.7e-74 282.7 340 45.6
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 6.2e-74 282.0 346 47.1
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.4e-73 280.8 343 46.4
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.8e-73 280.4 345 46.4
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 4.0e-73 279.3 317 48.3
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 1.2e-72 277.7 326 48.2
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.0e-72 276.9 345 44.9
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.7e-71 273.9 315 47.6
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 2.2e-71 273.5 343 45.5
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 4.9e-71 272.3 337 45.7
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 1.1e-70 271.2 309 49.2
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 7.1e-70 268.5 299 50.2
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.6e-69 267.3 315 47.3
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.6e-69 267.3 339 44.5
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.6e-69 267.3 339 44.5
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 4.6e-69 265.8 344 45.6
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 6.0e-69 265.4 347 44.4
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 2.3e-68 263.5 327 45.3
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 2.8e-66 256.5 353 45.0
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 4.8e-66 255.8 339 43.1
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.8e-65 253.8 346 43.4
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 4.1e-65 252.7 338 43.8
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 4.1e-65 252.7 351 44.2
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 6.9e-65 251.9 328 42.4
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 1.5e-64 250.8 342 43.9
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.5e-64 250.8 308 47.1
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.3e-63 247.7 348 43.4
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 2.2e-63 246.9 343 42.6
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 3.8e-63 246.1 334 44.0
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 5.0e-63 245.7 342 43.9
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 5.0e-63 245.7 307 45.3
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 6.5e-63 245.4 314 44.9
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 1.4e-62 244.2 349 43.0
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 9.4e-62 241.5 340 42.1
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.2e-61 241.1 310 43.9
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 4.6e-61 239.2 347 43.2
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.4e-60 237.7 343 40.8
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 3.0e-60 236.5 340 42.4
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 6.7e-60 235.3 347 43.2
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.5e-59 234.2 339 41.9
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 2.5e-59 233.4 350 42.9
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 5.7e-59 232.3 339 39.8
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 6.3e-58 228.8 321 40.8
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 1.4e-57 227.6 344 41.0
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 2.4e-57 226.9 337 43.3
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 2.4e-57 226.9 290 40.3
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 5.3e-57 225.7 344 40.7
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 4.5e-56 222.6 339 42.2
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 4.5e-56 222.6 278 45.0
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.4e-54 217.6 327 39.1
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 7.2e-54 215.3 330 39.7
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 9.4e-54 214.9 350 40.9
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 3.9e-52 209.5 283 42.4
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.5e-51 207.6 347 39.5
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 3.1e-49 199.9 193 53.4
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 2.6e-48 196.8 344 35.5
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 1.4e-44 184.5 333 34.2
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.3e-44 183.7 138 61.6
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 2.0e-43 180.6 309 40.1
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 7.4e-43 178.7 209 43.5
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.1e-41 173.3 138 58.7
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.2e-40 171.4 130 60.8
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 4.5e-40 169.5 340 37.6
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 4.7e-37 159.5 242 35.5
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.0e-36 158.3 257 34.2
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.4e-33 147.9 295 34.6
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 2.1e-29 134.0 286 35.3
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 3.4e-27 126.7 103 59.2
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.6e-16 91.3 142 38.0
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 9.2e-09 65.5 189 29.6


User provided reference genes

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