Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 5.4e-153 544.3 271 100.0
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 1.2e-144 516.5 271 93.4
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 3.6e-141 505.0 271 91.5
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 2.2e-138 495.7 271 89.3
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 2.2e-130 469.2 269 86.2
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 3.6e-125 451.8 270 84.4
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 6.0e-120 434.5 272 79.0
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 4.9e-114 414.8 277 78.0
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 2.7e-112 409.1 277 76.9
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 1.3e-109 400.2 282 68.8
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 1.1e-108 397.1 277 70.8
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 2.7e-104 382.5 268 72.8
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 1.8e-103 379.8 272 69.1
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 2.3e-103 379.4 279 67.7
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 5.1e-103 378.3 273 71.1
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 2.8e-101 372.5 276 67.0
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 3.7e-101 372.1 258 70.5
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 6.3e-101 371.3 257 71.2
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 4.1e-100 368.6 261 69.3
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 4.1e-100 368.6 261 69.3
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 4.1e-100 368.6 240 74.2
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 1.2e-99 367.1 276 67.0
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.5e-99 366.7 262 69.5
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 1.5e-99 366.7 281 64.1
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 2.0e-99 366.3 235 74.9
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 2.6e-99 365.9 268 67.9
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 4.5e-99 365.2 257 70.8
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 7.6e-99 364.4 264 67.8
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 2.5e-97 359.4 278 64.7
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 4.2e-97 358.6 281 63.7
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 7.2e-97 357.8 285 63.2
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 1.2e-96 357.1 234 73.5
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.6e-96 356.7 249 70.3
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 2.1e-96 356.3 272 65.4
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 6.1e-96 354.8 264 68.2
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 6.1e-96 354.8 268 66.4
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 7.9e-96 354.4 268 65.3
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 1.0e-95 354.0 278 65.1
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 1.0e-95 354.0 277 63.2
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 2.3e-95 352.8 279 64.5
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 2.3e-95 352.8 272 65.8
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 2.3e-95 352.8 275 64.4
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 3.0e-95 352.4 268 65.3
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 1.1e-94 350.5 259 66.4
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 1.5e-94 350.1 268 64.2
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.9e-94 349.7 279 63.8
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 2.5e-94 349.4 274 63.1
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 5.7e-94 348.2 197 86.3
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 9.7e-94 347.4 253 66.0
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 2.2e-93 346.3 274 63.5
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 2.8e-93 345.9 235 72.3
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 3.7e-93 345.5 248 68.5
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 2.4e-92 342.8 268 63.8
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 4.1e-92 342.0 253 66.4
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 6.9e-92 341.3 276 63.0
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 9.1e-92 340.9 268 63.4
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 3.4e-91 339.0 266 62.8
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 7.7e-91 337.8 277 64.3
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 2.9e-90 335.9 236 67.8
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 6.5e-90 334.7 247 65.6
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 1.1e-89 334.0 268 63.8
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 3.2e-89 332.4 313 56.2
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 4.2e-89 332.0 279 59.9
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 4.2e-89 332.0 313 55.9
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 7.2e-89 331.3 236 66.9
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 9.4e-89 330.9 297 57.9
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 1.2e-88 330.5 250 63.6
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 1.2e-88 330.5 209 73.7
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 2.1e-88 329.7 259 64.9
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 4.7e-88 328.6 236 67.4
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 4.7e-88 328.6 236 67.4
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 1.8e-87 326.6 263 63.1
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 3.9e-87 325.5 268 61.9
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 5.1e-87 325.1 268 61.9
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 2.6e-86 322.8 268 61.6
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 3.4e-83 312.4 242 62.4
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 1.3e-82 310.5 210 71.4
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 6.5e-82 308.1 324 52.2
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 2.7e-80 302.8 232 67.7
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 5.2e-79 298.5 209 67.5
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 7.4e-78 294.7 230 60.9
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 2.2e-77 293.1 268 57.8
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 3.5e-75 285.8 196 69.4
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 1.9e-73 280.0 270 56.7
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 2.7e-72 276.2 232 59.5
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 2.6e-70 269.6 212 64.6
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 2.2e-69 266.5 244 53.7
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 2.2e-69 266.5 213 65.7
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 2.8e-69 266.2 199 63.8
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 2.0e-67 260.0 279 50.9
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 4.2e-65 252.3 225 54.7
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 6.3e-61 238.4 223 55.2
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 1.2e-59 234.2 189 63.0
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 5.9e-59 231.9 212 58.5
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 5.9e-59 231.9 179 63.7
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 4.7e-56 222.2 169 64.5
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 1.3e-50 204.1 161 62.1
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 2.5e-49 199.9 133 73.7
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 7.3e-49 198.4 157 61.8
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 1.5e-46 190.7 174 56.9
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 3.7e-45 186.0 102 89.2
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 8.3e-45 184.9 176 53.4
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 7.0e-44 181.8 238 44.1
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 2.0e-43 180.3 314 35.7
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 2.0e-38 163.7 136 61.0
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 4.9e-37 159.1 140 55.7
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 5.1e-34 149.1 100 71.0
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 1.1e-33 147.9 104 73.1
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 1.8e-31 140.6 97 73.2
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 5.8e-30 135.6 108 57.4
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 3.7e-29 132.9 134 53.7
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 9.2e-28 128.3 98 66.3
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 6.6e-26 122.1 102 63.7
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 5.6e-25 119.0 100 57.0
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 1.1e-23 114.8 84 61.9
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 1.3e-21 107.8 233 32.2
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 7.8e-19 98.6 79 63.3
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-18 95.9 125 44.8
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 2.5e-17 93.6 83 60.2
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 2.4e-15 87.0 142 43.0
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 6.9e-15 85.5 65 67.7
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 1.7e-13 80.9 123 43.1
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 3.2e-12 76.6 67 62.7
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 5.4e-12 75.9 50 68.0
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 2.7e-11 73.6 54 63.0


User provided reference genes

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