Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 0.0e+00 1259.6 664 100.0
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 8.5e-277 956.8 651 82.2
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 3.2e-276 954.9 670 80.4
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 6.6e-253 877.5 648 77.2
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 3.4e-225 785.4 668 68.4
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 2.9e-208 729.2 679 64.9
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 6.2e-203 711.4 668 65.9
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 6.2e-203 711.4 654 64.7
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 9.0e-194 681.0 681 60.9
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 3.1e-186 656.0 662 60.6
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 5.9e-153 545.4 703 51.6
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 3.2e-146 523.1 696 49.3
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 1.7e-144 517.3 648 51.2
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 3.3e-143 513.1 708 47.7
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 1.2e-140 504.6 699 48.5
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.4e-138 497.7 716 48.3
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 3.2e-138 496.5 581 55.2
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 5.4e-138 495.7 714 47.8
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 2.7e-137 493.4 705 47.9
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 2.3e-136 490.3 712 47.9
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.5e-135 487.6 717 48.0
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 2.1e-134 483.8 572 52.8
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 1.8e-133 480.7 406 70.7
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 4.0e-133 479.6 716 47.9
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 8.9e-133 478.4 711 48.0
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 2.0e-132 477.2 688 47.2
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.3e-131 474.6 714 48.6
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 2.2e-131 473.8 691 48.2
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 1.9e-130 470.7 702 47.2
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 3.2e-130 469.9 701 47.2
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 1.2e-129 468.0 712 47.2
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 3.0e-128 463.4 585 52.6
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 2.8e-126 456.8 697 45.5
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 2.8e-126 456.8 559 52.8
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 3.6e-126 456.4 713 45.3
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 2.3e-125 453.8 588 49.5
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 3.4e-124 449.9 588 49.1
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 3.4e-124 449.9 710 45.4
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 4.1e-122 443.0 677 45.5
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 9.2e-122 441.8 728 44.8
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 2.1e-121 440.7 732 44.7
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 3.5e-121 439.9 678 45.3
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 8.9e-117 425.2 702 42.5
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 9.9e-116 421.8 593 47.4
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 3.8e-115 419.9 716 42.7
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 6.4e-115 419.1 742 41.9
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 8.4e-115 418.7 672 43.6
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 2.3e-112 410.6 749 40.6
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 3.1e-109 400.2 663 41.0
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 9.0e-109 398.7 649 43.1
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 8.7e-96 355.5 462 49.4
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 4.3e-95 353.2 547 45.2
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 5.6e-95 352.8 645 40.3
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 2.0e-92 344.4 461 49.7
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 4.5e-92 343.2 451 47.9
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 1.2e-89 335.1 448 48.2
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 1.3e-86 325.1 543 42.4
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 9.3e-82 308.9 325 55.4
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 5.7e-79 299.7 427 49.2
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 3.8e-75 287.0 522 42.0
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 3.0e-72 277.3 250 66.0
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 5.7e-71 273.1 533 38.8
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 6.5e-67 259.6 343 46.6
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 2.3e-64 251.1 441 42.4
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 2.6e-63 247.7 312 51.6
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 5.7e-63 246.5 655 34.5
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 5.3e-61 240.0 314 48.4
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 1.8e-56 224.9 388 44.8
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 1.3e-54 218.8 386 43.5
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 4.5e-52 210.3 247 50.2
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 2.2e-46 191.4 214 55.1
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.5e-42 178.7 227 45.8
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 5.0e-35 153.7 161 49.7
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 3.6e-33 147.5 427 30.7
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 6.8e-32 143.3 236 39.4
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 1.2e-31 142.5 478 32.4
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.7e-28 131.3 217 39.6
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 4.4e-23 114.0 145 53.1
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.4e-22 110.2 222 31.1
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.4e-22 110.2 222 31.1
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 2.4e-21 108.2 169 40.8
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.0e-21 106.7 295 28.8
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.0e-21 106.7 238 30.3
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.8e-20 103.2 269 29.4
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 7.8e-20 103.2 412 30.6
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.3e-16 91.7 263 30.4
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 1.2e-15 89.4 212 30.7
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 2.9e-14 84.7 133 45.1
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 1.3e-11 75.9 264 25.8
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 1.5e-10 72.4 262 24.4
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 5.6e-10 70.5 235 24.7
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 5.6e-10 70.5 235 24.3
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 5.6e-10 70.5 203 28.6
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 5.6e-10 70.5 277 22.4
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 1.2e-09 69.3 245 25.7
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 1.6e-09 68.9 221 27.6
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 1.6e-09 68.9 221 25.3
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 2.8e-09 68.2 233 24.0
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 2.8e-09 68.2 249 25.3
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.8e-09 68.2 237 27.4
Actinidia36758 Actinidia chinensis HOM05D007670 ORTHO05D009646 3.6e-09 67.8 79 49.4
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 3.6e-09 67.8 240 25.0
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 4.7e-09 67.4 257 25.3
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 8.1e-09 66.6 125 35.2
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 8.1e-09 66.6 248 25.0
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 8.1e-09 66.6 249 24.9
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 1.4e-08 65.9 236 24.2
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 1.8e-08 65.5 256 23.4
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.8e-08 65.5 237 27.4
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 1.8e-08 65.5 228 25.4
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 2.4e-08 65.1 217 24.0
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 2.4e-08 65.1 223 25.1
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 2.4e-08 65.1 223 25.1
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 3.1e-08 64.7 229 25.3
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 3.1e-08 64.7 208 25.0
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 4.0e-08 64.3 210 26.2
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 4.0e-08 64.3 255 24.3
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 5.2e-08 63.9 203 25.6
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 6.8e-08 63.5 247 24.7
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 2.0e-07 62.0 217 22.6
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 2.0e-07 62.0 342 21.6
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 2.0e-07 62.0 221 25.3
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 2.6e-07 61.6 222 26.1
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.6e-07 61.6 249 25.3
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 2.6e-07 61.6 221 26.7
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 3.4e-07 61.2 253 25.3
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 3.4e-07 61.2 255 23.5
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 3.4e-07 61.2 199 25.6
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 3.4e-07 61.2 294 22.8
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 3.4e-07 61.2 294 22.8
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 3.4e-07 61.2 241 25.3
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 7.6e-07 60.1 249 24.5
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 9.9e-07 59.7 251 24.3
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 1.7e-06 58.9 249 24.1
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 2.2e-06 58.5 219 24.2
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 6.4e-06 57.0 251 24.7


User provided reference genes

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