Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 8.3e-41 169.9 81 100.0
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.2e-31 139.4 84 83.3
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 2.3e-27 125.2 85 76.5
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 4.1e-24 114.4 83 71.1
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 3.5e-23 111.3 86 67.4
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 1.0e-22 109.8 78 70.5
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.5e-21 105.9 77 67.5
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 3.3e-21 104.8 72 69.4
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 1.1e-19 99.8 79 63.3
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 2.3e-19 98.6 75 64.0
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 6.8e-19 97.1 79 62.0
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.4e-18 94.4 81 60.5
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 4.4e-18 94.4 83 56.6
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 1.7e-17 92.4 71 62.0
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 2.9e-17 91.7 82 58.5
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.9e-17 91.7 68 61.8
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 3.7e-17 91.3 78 60.3
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 1.9e-16 89.0 76 64.5
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 5.4e-16 87.4 75 56.0
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 7.0e-16 87.0 69 60.9
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 1.2e-15 86.3 74 56.8
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 1.6e-15 85.9 76 63.2
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 2.0e-15 85.5 78 59.0
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 3.5e-15 84.7 74 54.1
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 3.5e-15 84.7 74 54.1
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 4.6e-15 84.3 74 54.1
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 4.6e-15 84.3 67 61.2
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 6.0e-15 84.0 77 58.4
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 7.8e-15 83.6 79 54.4
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 7.8e-15 83.6 76 60.5
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.0e-14 83.2 70 61.4
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.7e-14 82.4 71 56.3
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 1.7e-14 82.4 67 59.7
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 1.7e-14 82.4 87 52.9
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 1.7e-14 82.4 76 61.8
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.7e-14 82.4 69 55.1
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 2.3e-14 82.0 78 56.4
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 2.3e-14 82.0 76 60.5
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.3e-14 82.0 74 54.1
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 3.0e-14 81.6 67 55.2
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 3.9e-14 81.3 81 55.6
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.9e-14 81.3 70 58.6
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 3.9e-14 81.3 76 59.2
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 5.0e-14 80.9 72 55.6
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 5.0e-14 80.9 72 55.6
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 6.6e-14 80.5 75 57.3
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 6.6e-14 80.5 84 51.2
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 8.6e-14 80.1 70 60.0
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 8.6e-14 80.1 70 60.0
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 8.6e-14 80.1 73 54.8
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 8.6e-14 80.1 77 58.4
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.5e-13 79.3 65 55.4
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 1.5e-13 79.3 70 58.6
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 1.9e-13 79.0 76 53.9
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 1.9e-13 79.0 70 60.0
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.3e-13 78.2 87 52.9
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 4.3e-13 77.8 82 50.0
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.3e-13 77.8 71 57.7
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.3e-13 77.8 71 57.7
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.6e-13 77.4 70 58.6
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 1.2e-12 76.3 76 51.3
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 1.2e-12 76.3 76 52.6
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 1.2e-12 76.3 84 51.2
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.2e-12 76.3 74 51.4
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.6e-12 75.9 71 56.3
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.6e-12 75.9 71 56.3
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 1.6e-12 75.9 74 51.4
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.6e-12 75.9 87 50.6
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.1e-12 75.5 87 49.4
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.1e-12 75.5 73 49.3
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 4.7e-12 74.3 78 52.6
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 6.2e-12 73.9 84 48.8
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 6.2e-12 73.9 84 48.8
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 6.2e-12 73.9 66 54.5
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 1.1e-11 73.2 85 47.1
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 1.1e-11 73.2 80 48.8
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.4e-11 72.8 76 51.3
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.4e-11 72.8 82 45.1
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 1.4e-11 72.8 70 52.9
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.4e-11 72.8 88 48.9
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 1.8e-11 72.4 86 48.8
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 2.3e-11 72.0 83 48.2
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 2.3e-11 72.0 83 45.8
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 3.1e-11 71.6 77 46.8
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 3.1e-11 71.6 69 55.1
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 4.0e-11 71.2 73 52.1
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 4.0e-11 71.2 77 50.6
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 4.0e-11 71.2 65 53.8
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 5.2e-11 70.9 87 47.1
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 5.2e-11 70.9 72 47.2
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 6.8e-11 70.5 72 48.6
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 6.8e-11 70.5 67 53.7
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 6.8e-11 70.5 80 47.5
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 8.9e-11 70.1 80 47.5
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 1.2e-10 69.7 68 50.0
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 1.2e-10 69.7 68 50.0
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.2e-10 69.7 66 48.5
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 1.2e-10 69.7 86 48.8
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.2e-10 69.7 70 55.7
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.5e-10 69.3 73 49.3
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 2.6e-10 68.6 70 48.6
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 3.4e-10 68.2 71 47.9
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 3.4e-10 68.2 70 50.0
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.4e-10 68.2 63 47.6
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 5.8e-10 67.4 71 49.3
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 5.8e-10 67.4 68 52.9
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 1.3e-09 66.2 48 62.5
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 1.7e-09 65.9 73 49.3
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 1.7e-09 65.9 80 41.2
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 3.7e-09 64.7 75 49.3
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 3.7e-09 64.7 76 43.4
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 3.7e-09 64.7 72 44.4
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 4.9e-09 64.3 77 50.6
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 4.9e-09 64.3 89 41.6
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 6.4e-09 63.9 77 45.5
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 6.4e-09 63.9 82 47.6
HanXRQChr02g0043831 Helianthus annuus HOM05D003533 ORTHO05D222724 8.3e-09 63.5 60 53.3
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 1.4e-08 62.8 84 44.0
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 1.4e-08 62.8 84 44.0
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 1.4e-08 62.8 84 44.0
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 1.4e-08 62.8 84 44.0
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.4e-08 62.8 77 46.8
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 1.9e-08 62.4 72 44.4
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 2.4e-08 62.0 57 56.1
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 2.4e-08 62.0 74 44.6
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.4e-08 62.0 83 49.4
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 2.4e-08 62.0 72 41.7
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 3.2e-08 61.6 77 44.2
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 3.2e-08 61.6 73 42.5
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 3.2e-08 61.6 70 45.7
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 4.1e-08 61.2 68 47.1
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 4.1e-08 61.2 68 45.6
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 5.4e-08 60.8 72 44.4
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 5.4e-08 60.8 57 56.1
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 7.1e-08 60.5 67 47.8
Lsat_1_v5_gn_1_11180 Lactuca sativa HOM05D003533 ORTHO05D004009 9.2e-08 60.1 58 58.6
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 9.2e-08 60.1 72 45.8
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 1.2e-07 59.7 76 46.1
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 1.6e-07 59.3 62 51.6
HanXRQChr04g0107311 Helianthus annuus HOM05D003533 ORTHO05D004009 2.1e-07 58.9 65 50.8
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 2.7e-07 58.5 74 44.6
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 2.7e-07 58.5 74 44.6
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.7e-07 58.5 78 47.4
Actinidia34960 Actinidia chinensis HOM05D003533 ORTHO05D004009 3.5e-07 58.2 54 53.7
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 3.5e-07 58.2 68 45.6
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 3.5e-07 58.2 68 45.6
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 4.6e-07 57.8 76 40.8
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 4.6e-07 57.8 74 44.6
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 7.8e-07 57.0 66 48.5
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 7.8e-07 57.0 53 54.7
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.0e-06 56.6 74 45.9
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 1.3e-06 56.2 76 50.0
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 1.3e-06 56.2 70 41.4
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 1.3e-06 56.2 66 47.0
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 1.7e-06 55.8 78 42.3
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 1.7e-06 55.8 78 42.3
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.3e-06 55.5 76 40.8
Glyma.14G206400 Glycine max HOM05D003533 ORTHO05D004009 2.3e-06 55.5 37 70.3
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 3.9e-06 54.7 74 40.5
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 5.1e-06 54.3 71 39.4
Potri.012G075800 Populus trichocarpa HOM05D003533 ORTHO05D004009 5.1e-06 54.3 47 59.6
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 6.6e-06 53.9 78 38.5
Rhsim08G0167600 Rhododendron simsii HOM05D003533 ORTHO05D004009 8.6e-06 53.5 53 50.9


User provided reference genes

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