Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37438 Trifolium pratense HOM05D005989 ORTHO05D000022 4.6e-73 277.7 132 100.0
TPR.G16745 Trifolium pratense HOM05D005989 ORTHO05D000022 6.6e-64 247.3 124 94.4
TPR.G15449 Trifolium pratense HOM05D005989 ORTHO05D000022 4.8e-38 161.4 121 57.9
TPR.G3914 Trifolium pratense HOM05D005989 ORTHO05D000022 1.1e-31 140.2 98 60.2
TPR.G13740 Trifolium pratense HOM05D005989 ORTHO05D000022 3.2e-26 122.1 126 43.7
Atru.chr10.504 Acer truncatum HOM05D000003 ORTHO05D000022 6.9e-21 104.4 126 35.7
Atru.chr1.2142 Acer truncatum HOM05D000003 ORTHO05D000022 9.1e-21 104.0 126 35.7
Atru.chr5.1911 Acer truncatum HOM05D005989 ORTHO05D000022 9.1e-21 104.0 126 35.7
RcHm_v2.0_Chr4g0395061 Rosa chinensis HOM05D005989 ORTHO05D000022 9.1e-21 104.0 108 41.7
Atru.chr2.1816 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-20 102.4 126 35.7
Psat2g155160 Pisum sativum HOM05D005989 ORTHO05D000022 1.3e-19 100.1 126 37.3
RcHm_v2.0_Chr3g0459251 Rosa chinensis HOM05D005989 ORTHO05D000022 1.3e-19 100.1 108 39.8
RcHm_v2.0_Chr1g0352021 Rosa chinensis HOM05D005989 ORTHO05D000022 1.7e-19 99.8 125 37.6
RcHm_v2.0_Chr6g0264461 Rosa chinensis HOM05D005989 ORTHO05D000022 1.7e-19 99.8 125 37.6
Atru.chr1.1636 Acer truncatum HOM05D005989 ORTHO05D000022 3.8e-19 98.6 125 36.8
Atru.chr2.2454 Acer truncatum HOM05D005989 ORTHO05D000022 6.5e-19 97.8 125 36.8
Psat0s1775g0320 Pisum sativum HOM05D005989 ORTHO05D000022 6.5e-19 97.8 125 40.0
RcHm_v2.0_Chr5g0077831 Rosa chinensis HOM05D005989 ORTHO05D011902 6.5e-19 97.8 114 37.7
Atru.chr3.1839 Acer truncatum HOM05D005989 ORTHO05D000022 2.5e-18 95.9 126 33.3
TPR.G6692 Trifolium pratense HOM05D005989 ORTHO05D000022 2.5e-18 95.9 126 37.3
Atru.chr9.192 Acer truncatum HOM05D005989 ORTHO05D000022 3.2e-18 95.5 116 34.5
RcHm_v2.0_Chr7g0184971 Rosa chinensis HOM05D005989 ORTHO05D000022 3.2e-18 95.5 109 40.4
Atru.chr2.2552 Acer truncatum HOM05D005989 ORTHO05D000022 7.2e-18 94.4 121 37.2
RcHm_v2.0_Chr4g0409421 Rosa chinensis HOM05D005989 ORTHO05D000022 7.2e-18 94.4 119 37.0
Medtr3g052720 Medicago truncatula HOM05D000001 ORTHO05D000003 1.2e-17 93.6 126 38.1
RcHm_v2.0_Chr2g0160431 Rosa chinensis HOM05D000003 ORTHO05D000004 1.6e-17 93.2 125 36.8
FvH4_6g09211 Fragaria vesca HOM05D000003 ORTHO05D000651 2.7e-17 92.4 127 35.4
Prupe.4G283800 Prunus persica HOM05D005989 ORTHO05D000651 3.6e-17 92.0 123 38.2
RcHm_v2.0_Chr7g0185631 Rosa chinensis HOM05D000155 ORTHO05D000022 3.6e-17 92.0 125 36.0
Lalb_Chr18g0052711 Lupinus albus HOM05D005989 ORTHO05D000022 4.7e-17 91.7 112 39.3
Psat4g016640 Pisum sativum HOM05D005989 ORTHO05D000022 4.7e-17 91.7 125 38.4
RcHm_v2.0_Chr3g0451531 Rosa chinensis HOM05D005989 ORTHO05D000022 4.7e-17 91.7 125 36.0
RcHm_v2.0_Chr3g0453641 Rosa chinensis HOM05D000003 ORTHO05D000004 4.7e-17 91.7 125 36.0
Lalb_Chr21g0306271 Lupinus albus HOM05D005989 ORTHO05D000022 6.1e-17 91.3 128 36.7
RcHm_v2.0_Chr6g0278601 Rosa chinensis HOM05D000003 ORTHO05D000004 1.4e-16 90.1 125 32.8
RcHm_v2.0_Chr2g0167951 Rosa chinensis HOM05D005989 ORTHO05D000022 1.8e-16 89.7 112 36.6
MD07G1021300 Malus domestica HOM05D000155 ORTHO05D000022 2.3e-16 89.4 102 41.2
Atru.chr7.890 Acer truncatum HOM05D005989 ORTHO05D000022 3.9e-16 88.6 126 35.7
Glyma.13G358333 Glycine max HOM05D005989 ORTHO05D000022 5.2e-16 88.2 94 40.4
TPR.G40388 Trifolium pratense HOM05D005989 ORTHO05D000022 1.1e-15 87.0 107 45.8
Atru.chr3.1897 Acer truncatum HOM05D000003 ORTHO05D000651 2.6e-15 85.9 126 32.5
MD02G1050700 Malus domestica HOM05D000155 ORTHO05D000022 3.3e-15 85.5 102 41.2
MD13G1019000 Malus domestica HOM05D000155 ORTHO05D000022 3.3e-15 85.5 120 36.7
RcHm_v2.0_Chr2g0129631 Rosa chinensis HOM05D005989 ORTHO05D000651 4.4e-15 85.1 103 39.8
RcHm_v2.0_Chr3g0465511 Rosa chinensis HOM05D000155 ORTHO05D000022 5.7e-15 84.7 106 38.7
TPR.G18660 Trifolium pratense HOM05D005989 ORTHO05D000022 9.7e-15 84.0 124 34.7
Atru.chr8.108 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-14 83.2 110 32.7
RcHm_v2.0_Chr6g0259301 Rosa chinensis HOM05D000155 ORTHO05D000022 2.2e-14 82.8 126 32.5
RcHm_v2.0_Chr1g0357231 Rosa chinensis HOM05D000003 ORTHO05D000004 3.7e-14 82.0 119 33.6
Atru.chr11.94 Acer truncatum HOM05D005989 ORTHO05D000022 4.8e-14 81.6 121 33.9
RcHm_v2.0_Chr2g0140031 Rosa chinensis HOM05D000003 ORTHO05D000004 4.8e-14 81.6 121 33.1
RcHm_v2.0_Chr1g0316991 Rosa chinensis HOM05D005989 ORTHO05D000022 8.2e-14 80.9 119 32.8
RcHm_v2.0_Chr5g0000531 Rosa chinensis HOM05D000985 ORTHO05D011902 1.1e-13 80.5 113 37.2
RcHm_v2.0_Chr7g0206171 Rosa chinensis HOM05D005989 ORTHO05D000022 1.4e-13 80.1 125 32.0
RcHm_v2.0_Chr2g0120021 Rosa chinensis HOM05D005989 ORTHO05D000022 1.8e-13 79.7 119 31.9
FvH4_7g14701 Fragaria vesca HOM05D000021 ORTHO05D000010 4.1e-13 78.6 123 33.3
Lalb_Chr07g0188801 Lupinus albus HOM05D005989 ORTHO05D000022 7.0e-13 77.8 128 35.2
FvH4_3g24991 Fragaria vesca HOM05D005989 ORTHO05D000022 9.1e-13 77.4 97 40.2
Prupe.1G484600 Prunus persica HOM05D005989 ORTHO05D000022 9.1e-13 77.4 113 36.3
RcHm_v2.0_Chr4g0417481 Rosa chinensis HOM05D005989 ORTHO05D000022 1.2e-12 77.0 108 37.0
TPR.G23861 Trifolium pratense HOM05D005989 ORTHO05D000022 1.2e-12 77.0 98 37.8
FvH4_3g39131 Fragaria vesca HOM05D005989 ORTHO05D000022 1.6e-12 76.6 94 35.1
RcHm_v2.0_Chr2g0133661 Rosa chinensis HOM05D000155 ORTHO05D000022 1.6e-12 76.6 109 33.0
Aqoxy1G02708 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 2.0e-12 76.3 113 36.3
Atru.chr9.329 Acer truncatum HOM05D005989 ORTHO05D000022 5.9e-12 74.7 93 34.4
RcHm_v2.0_Chr3g0462451 Rosa chinensis HOM05D005989 ORTHO05D000022 5.9e-12 74.7 104 33.7
Atru.chr11.245 Acer truncatum HOM05D005989 ORTHO05D000022 7.7e-12 74.3 97 38.1
Aqoxy2G01848 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 7.7e-12 74.3 113 33.6
Lalb_Chr08g0232201 Lupinus albus HOM05D005989 ORTHO05D000022 7.7e-12 74.3 80 41.2
Medtr8g479410 Medicago truncatula HOM05D005989 ORTHO05D000022 1.0e-11 73.9 76 40.8
TPR.G36653 Trifolium pratense HOM05D000003 ORTHO05D000006 1.0e-11 73.9 93 37.6
PSO832G3439 Papaver somniferum HOM05D005989 ORTHO05D000022 1.7e-11 73.2 114 33.3
Lalb_Chr02g0160271 Lupinus albus HOM05D005989 ORTHO05D000022 6.5e-11 71.2 86 39.5
RcHm_v2.0_Chr4g0393351 Rosa chinensis HOM05D000155 ORTHO05D000022 6.5e-11 71.2 128 33.6
Psat1g101960 Pisum sativum HOM05D000003 ORTHO05D000007 1.5e-10 70.1 99 39.4
Atru.chr5.427 Acer truncatum HOM05D000155 ORTHO05D000022 1.9e-10 69.7 125 32.0
RcHm_v2.0_Chr6g0251621 Rosa chinensis HOM05D000155 ORTHO05D000022 1.9e-10 69.7 118 30.5
PSO063G2465 Papaver somniferum HOM05D005989 ORTHO05D000022 2.5e-10 69.3 110 33.6
PSO541G4268 Papaver somniferum HOM05D005989 ORTHO05D000022 2.5e-10 69.3 109 32.1
FvH4_6g51131 Fragaria vesca HOM05D000155 ORTHO05D000022 4.2e-10 68.6 99 33.3
Lalb_Chr23g0276181 Lupinus albus HOM05D005989 ORTHO05D000022 7.2e-10 67.8 124 32.3
Medtr6g061220 Medicago truncatula HOM05D005989 ORTHO05D000022 1.2e-09 67.0 71 47.9
MD05G1244100 Malus domestica HOM05D005989 ORTHO05D000022 2.7e-09 65.9 121 33.1
Medtr1g083630 Medicago truncatula HOM05D000008 ORTHO05D000005 2.7e-09 65.9 82 40.2
RcHm_v2.0_Chr6g0299951 Rosa chinensis HOM05D005989 ORTHO05D000022 2.7e-09 65.9 90 34.4
RcHm_v2.0_Chr3g0472841 Rosa chinensis HOM05D000155 ORTHO05D000022 4.7e-09 65.1 97 35.1
SEGI_14515 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 4.7e-09 65.1 116 31.9
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 1.4e-08 63.5 131 34.4
FvH4_2g01462 Fragaria vesca HOM05D005989 ORTHO05D000022 1.4e-08 63.5 128 27.3
Medtr2g033485 Medicago truncatula HOM05D005989 ORTHO05D000022 1.4e-08 63.5 59 49.2
RcHm_v2.0_Chr5g0016091 Rosa chinensis HOM05D005989 ORTHO05D020750 1.4e-08 63.5 105 34.3
Aqoxy1G04169 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.8e-08 63.2 100 34.0
Aqoxy4G00597 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.3e-08 62.8 111 33.3
Aqoxy4G00306 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.0e-08 62.4 107 35.5
Aqoxy4G00624 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.0e-08 62.4 92 33.7
Aqoxy4G01096 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.0e-08 62.4 88 36.4
Lalb_Chr06g0169621 Lupinus albus HOM05D005989 ORTHO05D000022 5.2e-08 61.6 76 32.9
Nn1g06818 Nelumbo nucifera HOM05D000155 ORTHO05D000022 6.7e-08 61.2 107 29.9
PSO591G0011 Papaver somniferum HOM05D012095 ORTHO05D013621 6.7e-08 61.2 128 28.1
Atru.chr5.433 Acer truncatum HOM05D005989 ORTHO05D000022 8.8e-08 60.8 91 34.1
Aqoxy1G02491 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.8e-08 60.8 100 31.0
Aqoxy5G02924 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 8.8e-08 60.8 100 32.0
RcHm_v2.0_Chr6g0263381 Rosa chinensis HOM05D000155 ORTHO05D000022 8.8e-08 60.8 98 31.6
RcHm_v2.0_Chr7g0237631 Rosa chinensis HOM05D005989 ORTHO05D000022 1.2e-07 60.5 85 28.2
TPR.G20228 Trifolium pratense HOM05D005989 ORTHO05D000022 1.2e-07 60.5 44 56.8
Medtr0126s0110 Medicago truncatula HOM05D060367 ORTHO05D000022 2.0e-07 59.7 107 35.5
Medtr7g059380 Medicago truncatula HOM05D005989 ORTHO05D000022 2.6e-07 59.3 68 38.2
Medtr8g076430 Medicago truncatula HOM05D005989 ORTHO05D000022 2.6e-07 59.3 57 49.1
Atru.chr3.1667 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-07 58.9 67 37.3
Atru.chr8.558 Acer truncatum HOM05D000003 ORTHO05D000022 3.3e-07 58.9 73 30.1
COL.COLO4_31628 Corchorus olitorius HOM05D000774 ORTHO05D000602 4.4e-07 58.5 107 29.9
FvH4_5g36041 Fragaria vesca HOM05D000514 ORTHO05D000222 4.4e-07 58.5 60 41.7
Lalb_Chr18g0059991 Lupinus albus HOM05D000155 ORTHO05D000022 4.4e-07 58.5 108 34.3
Medtr6g055090 Medicago truncatula HOM05D005989 ORTHO05D000022 4.4e-07 58.5 60 50.0
Medtr7g035440 Medicago truncatula HOM05D005989 ORTHO05D000022 4.4e-07 58.5 67 40.3
Medtr8g069665 Medicago truncatula HOM05D000111 ORTHO05D000022 4.4e-07 58.5 85 42.4
Aqoxy1G02953 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.7e-07 58.2 100 30.0
Aqoxy6G02318 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 5.7e-07 58.2 111 28.8
ClCG03G005440 Citrullus lanatus HOM05D000155 ORTHO05D000022 5.7e-07 58.2 126 28.6
FvH4_5g27541 Fragaria vesca HOM05D005989 ORTHO05D000022 7.5e-07 57.8 96 31.2
PSO384G2729 Papaver somniferum HOM05D000003 ORTHO05D000651 7.5e-07 57.8 107 32.7
Psat5g220480 Pisum sativum HOM05D015237 ORTHO05D000022 7.5e-07 57.8 80 37.5
Aqoxy1G03921 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 9.7e-07 57.4 107 30.8
CSS0009143 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 9.7e-07 57.4 122 29.5
RcHm_v2.0_Chr3g0472791 Rosa chinensis HOM05D000155 ORTHO05D000022 9.7e-07 57.4 95 32.6
arahy.Tifrunner.gnm1.ann1.GCX8RD Arachis hypogaea HOM05D000155 ORTHO05D000022 1.3e-06 57.0 108 32.4
Cc00_g03270 Coffea canephora HOM05D000155 ORTHO05D000022 1.3e-06 57.0 130 28.5
Cc00_g05820 Coffea canephora HOM05D000155 ORTHO05D000022 1.3e-06 57.0 130 28.5
RcHm_v2.0_Chr7g0222341 Rosa chinensis HOM05D005989 ORTHO05D017036 1.7e-06 56.6 50 44.0
Atru.chr3.2572 Acer truncatum HOM05D000155 ORTHO05D000022 2.2e-06 56.2 122 28.7
Aqoxy4G01322 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 2.2e-06 56.2 92 33.7
Aqoxy4G01484 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.2e-06 56.2 88 35.2
Atru.chr12.2056 Acer truncatum HOM05D000003 ORTHO05D000022 2.8e-06 55.8 62 37.1
Aqoxy2G01515 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 2.8e-06 55.8 88 36.4
PSO111G0053 Papaver somniferum HOM05D000003 ORTHO05D000651 2.8e-06 55.8 91 36.3
RcHm_v2.0_Chr6g0253181 Rosa chinensis HOM05D005989 ORTHO05D000022 2.8e-06 55.8 82 32.9
Sed0011096 Sechium edule HOM05D000155 ORTHO05D000022 3.7e-06 55.5 107 27.1
SGA_v2.0_scaffold26G11323 Striga asiatica HOM05D001893 ORTHO05D001914 3.7e-06 55.5 131 29.0
Actinidia26986 Actinidia chinensis HOM05D000774 ORTHO05D000602 4.8e-06 55.1 110 30.0
MBI15_g21449_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.8e-06 55.1 109 30.3
MBI17_g24634_MAGBIO Magnolia biondii HOM05D000061 ORTHO05D003487 4.8e-06 55.1 131 29.8
Nitab4.5_0001387g0100 Nicotiana tabacum HOM05D024027 ORTHO05D000022 4.8e-06 55.1 82 39.0
QL05p080949 Quercus lobata HOM05D000155 ORTHO05D000022 4.8e-06 55.1 107 27.1
PGSC0003DMG400041332 Solanum tuberosum HOM05D000155 ORTHO05D000022 4.8e-06 55.1 132 28.8
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 6.3e-06 54.7 128 27.3
MELO3C002549.2 Cucumis melo HOM05D000155 ORTHO05D000022 6.3e-06 54.7 107 29.0
PSO063G6702 Papaver somniferum HOM05D012095 ORTHO05D013621 6.3e-06 54.7 85 34.1
TPR.G25752 Trifolium pratense HOM05D009299 ORTHO05D000022 6.3e-06 54.7 52 46.2
Medtr1g110910 Medicago truncatula HOM05D005989 ORTHO05D000022 8.2e-06 54.3 62 43.5
PSO017G5611 Papaver somniferum HOM05D000003 ORTHO05D000651 8.2e-06 54.3 94 36.2


User provided reference genes

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