Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37389 Trifolium pratense HOM05D000902 ORTHO05D025187 1.4e-37 159.1 78 100.0
TPR.G33376 Trifolium pratense HOM05D000902 ORTHO05D000832 1.5e-23 112.5 73 79.5
Lalb_Chr09g0333391 Lupinus albus HOM05D000902 ORTHO05D000832 6.1e-17 90.5 73 64.4
Medtr8g076590 Medicago truncatula HOM05D000902 ORTHO05D000832 3.0e-16 88.2 71 64.8
Phvul.003G258200 Phaseolus vulgaris HOM05D000902 ORTHO05D000832 6.3e-14 80.5 73 58.9
Glyma.16G131900 Glycine max HOM05D000902 ORTHO05D000832 1.8e-13 79.0 73 56.2
Thecc.01G025500 Theobroma cacao HOM05D000902 ORTHO05D000832 9.2e-13 76.6 61 63.9
Duzib147G0635 Durio zibethinus HOM05D000902 ORTHO05D000832 3.5e-12 74.7 61 59.0
Gohir.A11G179000 Gossypium hirsutum HOM05D000902 ORTHO05D000832 5.9e-12 73.9 79 51.9
Gorai.007G198400 Gossypium raimondii HOM05D000902 ORTHO05D000832 5.9e-12 73.9 79 50.6
Lj4g0013705 Lotus japonicus HOM05D000902 ORTHO05D000832 1.0e-11 73.2 71 53.5
COL.COLO4_21986 Corchorus olitorius HOM05D000902 ORTHO05D025187 6.6e-11 70.5 61 54.1
Sabra05G0097400 Salix brachista HOM05D000902 ORTHO05D000832 6.6e-11 70.5 77 48.1
Potri.005G118400 Populus trichocarpa HOM05D000902 ORTHO05D000832 2.5e-10 68.6 73 50.7
PGR119G2534 Punica granatum HOM05D000902 ORTHO05D000832 5.6e-10 67.4 62 53.2
CiPaw.08G136700 Carya illinoinensis HOM05D000902 ORTHO05D000832 7.3e-10 67.0 68 51.5
CSS0025358 Camellia sinensis var. sinensis HOM05D000902 ORTHO05D000832 9.5e-10 66.6 62 56.5
QL06p034627 Quercus lobata HOM05D000902 ORTHO05D000832 2.1e-09 65.5 73 49.3
TAR628G1548 Trochodendron aralioides HOM05D000902 ORTHO05D000832 2.8e-09 65.1 68 52.9
TWI73G1052 Tripterygium wilfordii HOM05D000902 ORTHO05D000832 3.6e-09 64.7 67 47.8
Atru.chr3.744 Acer truncatum HOM05D000902 ORTHO05D000832 6.2e-09 63.9 66 50.0
MSTRG.2499 Avicennia marina HOM05D000902 ORTHO05D000832 6.2e-09 63.9 58 51.7
AUR62004120 Chenopodium quinoa HOM05D000902 ORTHO05D000832 6.2e-09 63.9 61 52.5
AUR62007634 Chenopodium quinoa HOM05D000902 ORTHO05D000832 6.2e-09 63.9 61 52.5
Dinv33583 Davidia involucrata HOM05D000902 ORTHO05D000832 6.2e-09 63.9 61 54.1
ClCG07G008800 Citrullus lanatus HOM05D000902 ORTHO05D000832 8.0e-09 63.5 60 56.7
HanXRQChr11g0325591 Helianthus annuus HOM05D000902 ORTHO05D000832 8.0e-09 63.5 79 44.3
Manes.02G099900 Manihot esculenta HOM05D000902 ORTHO05D000832 8.0e-09 63.5 61 57.4
arahy.Tifrunner.gnm1.ann1.CKDA6G Arachis hypogaea HOM05D000902 ORTHO05D000832 1.0e-08 63.2 58 58.6
arahy.Tifrunner.gnm1.ann1.NPCD8X Arachis hypogaea HOM05D000902 ORTHO05D000832 1.0e-08 63.2 58 58.6
Ciclev10025076m.g Citrus clementina HOM05D000902 ORTHO05D000832 1.4e-08 62.8 70 41.4
GSVIVG01018849001 Vitis vinifera HOM05D000902 ORTHO05D000832 1.4e-08 62.8 59 54.2
Cc07_g10230 Coffea canephora HOM05D000902 ORTHO05D000832 1.8e-08 62.4 60 53.3
CANSAT01G2052 Cannabis sativa HOM05D000902 ORTHO05D000832 2.3e-08 62.0 62 48.4
Cfa006923 Carpinus fangiana HOM05D000902 ORTHO05D000832 2.3e-08 62.0 61 52.5
Haze_03826 Corylus avellana HOM05D000902 ORTHO05D025187 2.3e-08 62.0 61 52.5
Nitab4.5_0006760g0010 Nicotiana tabacum HOM05D000902 ORTHO05D000832 2.3e-08 62.0 61 50.8
EL10As8g23872 Beta vulgaris HOM05D000902 ORTHO05D000832 3.1e-08 61.6 61 52.5
DCAR_017327 Daucus carota HOM05D000902 ORTHO05D000832 3.1e-08 61.6 67 52.2
Prupe.7G163400 Prunus persica HOM05D000902 ORTHO05D000832 4.0e-08 61.2 62 53.2
Nn1g05981 Nelumbo nucifera HOM05D000902 ORTHO05D000832 5.2e-08 60.8 59 54.2
Lj4A212T28 Lonicera japonica HOM05D000902 ORTHO05D000832 6.8e-08 60.5 60 48.3
THA.LOC104804249 Tarenaya hassleriana HOM05D000902 ORTHO05D000832 8.9e-08 60.1 60 51.7
Cpa.g.sc6.194 Carica papaya HOM05D000902 ORTHO05D000832 1.2e-07 59.7 64 50.0
ECA232G4845 Erigeron canadensis HOM05D000902 ORTHO05D000832 1.2e-07 59.7 78 44.9
Hund14016 Selenicereus undatus HOM05D000902 ORTHO05D000832 1.2e-07 59.7 59 45.8
CAN.G358.19 Capsicum annuum HOM05D000902 ORTHO05D000832 1.5e-07 59.3 61 47.5
CsaV3_4G005370 Cucumis sativus L. HOM05D000902 ORTHO05D000832 1.5e-07 59.3 60 55.0
Hund16464 Selenicereus undatus HOM05D000902 ORTHO05D000832 1.5e-07 59.3 61 49.2
Sp7g34010 Schrenkiella parvula HOM05D000902 ORTHO05D000832 2.0e-07 58.9 61 49.2
Sed0011838 Sechium edule HOM05D000902 ORTHO05D000832 2.0e-07 58.9 61 55.7
AL7G14740 Arabidopsis lyrata HOM05D000902 ORTHO05D000832 2.6e-07 58.5 58 53.4
AL7G14760 Arabidopsis lyrata HOM05D000902 ORTHO05D000832 2.6e-07 58.5 59 49.2
Thhalv10024673m.g Eutrema salsugineum HOM05D000902 ORTHO05D000832 2.6e-07 58.5 80 41.2
Peaxi162Scf00084g01217 Petunia axillaris HOM05D000902 ORTHO05D000832 2.6e-07 58.5 60 48.3
Solyc02g084700.3 Solanum lycopersicum HOM05D000902 ORTHO05D000832 2.6e-07 58.5 61 45.9
Sopen02g029370 Solanum pennellii HOM05D000902 ORTHO05D000832 2.6e-07 58.5 61 45.9
CARHR244680 Cardamine hirsuta HOM05D000902 ORTHO05D000832 3.4e-07 58.2 58 51.7
MD02G1137200 Malus domestica HOM05D000902 ORTHO05D000832 3.4e-07 58.2 62 51.6
Actinidia26089 Actinidia chinensis HOM05D000902 ORTHO05D000832 5.8e-07 57.4 58 53.4
Rhsim10G0214800 Rhododendron simsii HOM05D000902 ORTHO05D025187 7.5e-07 57.0 60 48.3
vmacro21901 Vaccinium macrocarpon HOM05D000902 ORTHO05D025187 7.5e-07 57.0 60 50.0
BcaNung00742 Brassica carinata HOM05D000902 ORTHO05D000832 9.8e-07 56.6 58 48.3
A01p02470 Brassica napus HOM05D000902 ORTHO05D000832 9.8e-07 56.6 58 48.3
BolC1t00257H Brassica oleracea HOM05D000902 ORTHO05D000832 9.8e-07 56.6 58 48.3
BraA01t00234Z Brassica rapa HOM05D000902 ORTHO05D000832 9.8e-07 56.6 58 48.3
Migut.H02495 Erythranthe guttata HOM05D000902 ORTHO05D000832 9.8e-07 56.6 58 46.6
AL7G14750 Arabidopsis lyrata HOM05D000902 ORTHO05D000832 2.2e-06 55.5 58 50.0
CARHR244670 Cardamine hirsuta HOM05D000902 ORTHO05D000832 2.9e-06 55.1 58 48.3
ATR0661G195 Amborella trichopoda HOM05D000902 ORTHO05D000832 3.7e-06 54.7 57 49.1
AT4G36270 Arabidopsis thaliana HOM05D000902 ORTHO05D000832 3.7e-06 54.7 58 50.0
Sc03g0003290 Simmondsia chinensis HOM05D000902 ORTHO05D000832 3.7e-06 54.7 58 46.6
Carub.0007s0396 Capsella rubella HOM05D000902 ORTHO05D000832 4.9e-06 54.3 58 46.6
PSO170G4458 Papaver somniferum HOM05D000902 ORTHO05D000832 6.4e-06 53.9 58 43.1
PSO210G6635 Papaver somniferum HOM05D000902 ORTHO05D000832 6.4e-06 53.9 58 43.1
Eucgr.I02381 Eucalyptus grandis HOM05D000902 ORTHO05D000832 8.3e-06 53.5 59 44.1
SGA_v2.0_scaffold280G46853 Striga asiatica HOM05D000902 ORTHO05D000832 8.3e-06 53.5 63 44.4


User provided reference genes

Program Settings