Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 1.6e-96 356.3 206 100.0
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 8.1e-93 344.0 203 99.0
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.7e-90 336.3 201 92.5
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 1.4e-89 333.2 203 85.7
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 1.4e-89 333.2 203 85.7
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 1.4e-89 333.2 203 85.7
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 2.1e-88 329.3 203 84.2
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 2.3e-87 325.9 203 93.6
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 1.1e-86 323.6 203 84.2
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 2.5e-86 322.4 203 91.1
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 3.3e-86 322.0 203 90.1
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 4.3e-86 321.6 203 82.8
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 1.8e-84 316.2 203 79.8
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 1.2e-83 313.5 203 78.8
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 2.9e-82 308.9 203 77.8
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 8.4e-82 307.4 202 76.7
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 1.1e-81 307.0 203 76.4
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 1.2e-80 303.5 203 76.8
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 2.7e-80 302.4 203 74.9
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 1.3e-79 300.1 203 82.8
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 2.3e-79 299.3 203 74.9
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 2.3e-79 299.3 203 74.9
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 2.3e-79 299.3 203 73.9
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 3.0e-79 298.9 203 75.4
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 5.1e-79 298.1 203 73.9
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 1.1e-78 297.0 203 82.3
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 1.1e-78 297.0 202 73.3
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 1.1e-78 297.0 203 73.9
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 1.9e-78 296.2 199 76.4
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 2.5e-78 295.8 198 76.3
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 2.5e-78 295.8 203 73.4
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 5.7e-78 294.7 198 75.8
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 7.4e-78 294.3 203 83.3
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 7.4e-78 294.3 200 73.0
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 7.4e-78 294.3 203 73.9
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 9.7e-78 293.9 203 73.9
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 1.3e-77 293.5 203 73.9
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 1.3e-77 293.5 202 71.8
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.6e-77 293.1 200 76.0
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 2.1e-77 292.7 203 72.4
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 2.8e-77 292.4 203 73.9
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 2.8e-77 292.4 200 75.5
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 4.8e-77 291.6 203 74.9
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 4.8e-77 291.6 203 72.9
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 8.2e-77 290.8 198 74.7
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 2.4e-76 289.3 203 70.4
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 5.3e-76 288.1 194 77.3
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 6.9e-76 287.7 202 70.8
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 9.0e-76 287.3 199 72.4
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 9.0e-76 287.3 198 73.7
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 9.0e-76 287.3 199 73.4
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 1.2e-75 287.0 199 70.4
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 2.0e-75 286.2 203 71.9
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 5.9e-75 284.6 197 73.1
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 5.9e-75 284.6 203 71.9
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 7.6e-75 284.3 201 72.1
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 1.0e-74 283.9 203 80.8
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 1.7e-74 283.1 200 74.0
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 6.5e-74 281.2 198 71.7
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 1.4e-73 280.0 199 71.4
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 1.4e-73 280.0 198 72.2
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 2.5e-73 279.3 201 70.1
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 5.5e-73 278.1 197 71.1
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 7.2e-73 277.7 197 71.1
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 7.2e-73 277.7 258 58.9
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.2e-72 276.9 197 70.6
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.2e-72 276.9 197 70.6
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 1.2e-72 276.9 197 70.6
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 1.6e-72 276.6 197 70.6
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 1.6e-72 276.6 203 68.5
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 1.6e-72 276.6 197 71.1
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 2.7e-72 275.8 197 70.6
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 4.6e-72 275.0 197 71.6
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 7.9e-72 274.2 197 69.5
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 1.3e-71 273.5 201 67.2
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 2.3e-71 272.7 203 67.0
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 3.0e-71 272.3 207 68.1
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 8.7e-71 270.8 201 66.7
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 1.1e-70 270.4 198 68.2
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 2.5e-70 269.2 202 77.7
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 5.7e-70 268.1 198 67.7
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 4.8e-69 265.0 199 65.8
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 1.0e-66 257.3 199 64.8
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 6.5e-66 254.6 149 85.2
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.5e-65 252.7 277 52.7
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.7e-64 249.2 149 83.2
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 1.4e-63 246.9 159 75.5
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 3.0e-63 245.7 208 63.0
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 5.1e-63 245.0 148 80.4
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 1.3e-61 240.4 149 78.5
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 8.5e-58 227.6 218 54.6
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 6.7e-55 218.0 207 55.1
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 6.7e-55 218.0 149 73.2
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 3.3e-54 215.7 158 63.9
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 1.3e-53 213.8 219 51.6
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 5.3e-52 208.4 203 58.6
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.3e-50 203.8 271 44.6
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 1.1e-49 200.7 213 51.2
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 4.2e-49 198.7 246 46.7
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 2.1e-48 196.4 149 62.4
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 8.2e-45 184.5 216 44.4
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 7.0e-44 181.4 216 50.9
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 2.2e-42 176.4 199 53.3
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 8.0e-40 167.9 91 91.2
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 6.8e-39 164.9 230 43.9
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 9.8e-38 161.0 96 83.3
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 6.3e-37 158.3 108 94.4
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 1.1e-36 157.5 91 86.8
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 1.6e-35 153.7 91 84.6
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 1.6e-35 153.7 93 86.0
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 4.0e-31 139.0 105 70.5
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 4.0e-23 112.5 136 49.3
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 3.9e-18 95.9 56 94.6
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 1.2e-11 74.3 41 87.8
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 7.8e-11 71.6 80 63.8
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 1.7e-10 70.5 41 97.6


User provided reference genes

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