Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 4.7e-38 160.6 76 100.0
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 2.3e-32 141.7 77 90.9
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.4e-26 122.5 77 79.2
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.4e-26 121.7 76 76.3
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 1.5e-23 112.5 72 70.8
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 7.3e-23 110.2 74 70.3
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 9.5e-23 109.8 76 69.7
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.6e-22 109.0 77 68.8
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 8.1e-22 106.7 78 71.8
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 2.3e-21 105.1 77 64.9
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.1e-21 104.8 75 72.0
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 3.1e-21 104.8 78 73.1
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.1e-21 104.8 76 65.8
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.0e-21 104.4 78 66.7
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.2e-21 104.0 78 66.7
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.5e-20 102.4 78 65.4
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.8e-20 100.5 77 61.0
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 1.3e-19 99.4 78 60.3
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.2e-19 98.6 73 65.8
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.7e-19 97.8 77 59.7
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.7e-19 97.8 77 59.7
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 3.7e-19 97.8 77 62.3
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 4.9e-19 97.4 77 67.5
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 8.3e-19 96.7 77 63.6
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 1.1e-18 96.3 51 80.4
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 1.4e-18 95.9 77 59.7
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 2.4e-18 95.1 79 63.3
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 5.4e-18 94.0 81 63.0
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.7e-17 91.7 78 60.3
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 4.6e-17 90.9 77 55.8
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 2.3e-16 88.6 50 78.0
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.5e-15 85.1 81 55.6
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.5e-15 85.1 81 55.6
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.5e-15 85.1 81 55.6
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.6e-14 82.4 79 54.4
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.6e-14 82.4 78 52.6
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.1e-14 82.0 78 52.6
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 3.6e-14 81.3 78 53.8
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 2.4e-13 78.6 70 57.1
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 4.0e-13 77.8 95 51.6
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.0e-13 77.8 95 51.6
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 5.2e-13 77.4 95 51.6
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 5.2e-13 77.4 74 55.4
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 8.9e-13 76.6 95 50.5
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 2.0e-12 75.5 95 50.5
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 7.6e-12 73.6 77 54.5
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 2.2e-11 72.0 69 58.0
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 3.8e-11 71.2 83 50.6
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 6.4e-11 70.5 77 51.9
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 8.4e-11 70.1 64 56.2
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 2.4e-10 68.6 75 54.7
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.1e-10 67.8 66 57.6
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 5.4e-10 67.4 48 64.6
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 7.1e-10 67.0 67 52.2
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 1.2e-09 66.2 62 53.2
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.6e-09 65.9 67 50.7
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 2.1e-09 65.5 69 55.1
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.7e-09 65.1 69 53.6
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 2.7e-09 65.1 69 52.2
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.7e-09 65.1 70 51.4
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 3.5e-09 64.7 46 65.2
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 3.5e-09 64.7 64 48.4
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 7.8e-09 63.5 73 47.9
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 1.0e-08 63.2 70 47.1
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 1.0e-08 63.2 60 51.7
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 1.0e-08 63.2 68 47.1
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-08 62.8 70 50.0
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-08 62.8 70 50.0
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-08 62.8 70 50.0
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.3e-08 62.8 70 50.0
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.3e-08 62.8 70 50.0
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 1.3e-08 62.8 69 50.7
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 3.0e-08 61.6 64 48.4
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 5.1e-08 60.8 70 52.9
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 5.1e-08 60.8 70 52.9
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 5.1e-08 60.8 73 53.4
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 6.6e-08 60.5 70 44.3
Migut.L00903 Erythranthe guttata HOM05D004540 ORTHO05D004852 6.6e-08 60.5 73 46.6
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 8.7e-08 60.1 67 49.3
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.1e-07 59.7 76 43.4
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.1e-07 59.7 70 48.6
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 1.5e-07 59.3 76 50.0
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 1.5e-07 59.3 78 46.2
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.9e-07 58.9 77 46.8
SGA_v2.0_scaffold137G35143 Striga asiatica HOM05D004540 ORTHO05D004852 1.9e-07 58.9 73 46.6
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.5e-07 58.5 60 50.0
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.5e-07 58.5 71 43.7
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 2.5e-07 58.5 73 52.1
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 4.3e-07 57.8 78 47.4
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 4.3e-07 57.8 80 40.0
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.3e-07 57.8 65 49.2
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 5.6e-07 57.4 80 41.2
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 5.6e-07 57.4 80 42.5
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 5.6e-07 57.4 76 39.5
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 5.6e-07 57.4 76 39.5
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 7.3e-07 57.0 75 41.3
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 9.6e-07 56.6 79 40.5
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-06 56.2 75 41.3
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 1.2e-06 56.2 75 41.3
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 1.2e-06 56.2 69 46.4
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 2.1e-06 55.5 77 44.2
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.1e-06 55.5 76 39.5
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 4.7e-06 54.3 75 41.3
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 6.2e-06 53.9 79 39.2
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 6.2e-06 53.9 80 40.0
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 6.2e-06 53.9 79 39.2
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 8.1e-06 53.5 66 43.9
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 8.1e-06 53.5 79 39.2
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 8.1e-06 53.5 79 39.2
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 8.1e-06 53.5 69 47.8


User provided reference genes

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