Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 2.3e-115 419.1 236 100.0
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 5.7e-82 308.1 173 93.1
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.4e-72 276.9 172 87.2
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.7e-70 270.0 178 83.1
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 1.4e-56 223.8 161 73.3
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 4.7e-52 208.8 174 66.7
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 4.7e-52 208.8 165 71.5
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 4.0e-51 205.7 178 67.4
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 5.7e-50 201.8 170 69.4
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 1.0e-35 154.5 172 54.1
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 4.9e-33 145.6 191 50.3
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 1.4e-32 144.1 186 52.7
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 2.4e-32 143.3 186 52.7
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 5.9e-31 138.7 193 47.2
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 1.9e-29 133.7 188 47.3
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 3.1e-27 126.3 185 45.4
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 6.8e-27 125.2 165 50.3
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 1.5e-26 124.0 182 47.3
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.4e-26 122.9 185 44.9
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 3.4e-26 122.9 181 44.2
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 7.5e-26 121.7 190 43.7
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 9.8e-26 121.3 194 44.3
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 1.3e-25 120.9 172 44.2
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 1.3e-25 120.9 183 49.2
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 1.7e-25 120.6 185 45.4
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 3.7e-25 119.4 172 45.9
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 8.3e-25 118.2 175 45.7
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 8.3e-25 118.2 167 46.1
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.1e-24 117.9 172 46.5
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 1.1e-24 117.9 182 45.6
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 1.4e-24 117.5 181 44.8
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.4e-24 117.5 175 45.7
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 1.4e-24 117.5 183 44.3
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.9e-24 117.1 175 45.7
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 3.2e-24 116.3 190 41.6
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.2e-24 116.3 181 44.8
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 4.1e-24 115.9 173 43.9
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 4.1e-24 115.9 183 42.6
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 4.1e-24 115.9 170 46.5
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 5.4e-24 115.5 190 45.8
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 9.2e-24 114.8 170 46.5
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 1.2e-23 114.4 170 44.7
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 3.5e-23 112.8 144 50.0
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.3e-22 110.9 175 45.1
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 2.3e-22 110.2 175 42.9
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 3.9e-22 109.4 179 41.9
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 3.9e-22 109.4 170 42.9
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 5.0e-22 109.0 170 47.1
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 2.5e-21 106.7 171 42.7
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 5.6e-21 105.5 176 42.6
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 7.3e-21 105.1 91 65.9
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 7.3e-21 105.1 167 43.1
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 9.5e-21 104.8 186 40.9
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.6e-20 104.0 180 40.0
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.1e-20 103.6 167 43.7
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 2.8e-20 103.2 180 41.1
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 2.8e-20 103.2 180 40.0
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 6.2e-20 102.1 167 41.9
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.1e-19 101.3 178 41.6
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.1e-19 101.3 161 42.2
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.4e-19 100.9 180 39.4
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 1.4e-19 100.9 186 39.8
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 1.4e-19 100.9 186 39.8
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.3e-19 100.1 168 39.3
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.1e-19 99.8 170 39.4
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 3.1e-19 99.8 161 41.0
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 4.0e-19 99.4 180 39.4
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 4.0e-19 99.4 181 40.3
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 4.0e-19 99.4 176 39.8
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 4.0e-19 99.4 176 40.3
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 4.4e-18 95.9 201 36.8
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 4.4e-18 95.9 156 45.5
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 5.8e-18 95.5 171 39.2
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 1.3e-17 94.4 89 58.4
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.3e-17 94.4 168 38.1
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.3e-17 94.4 168 38.1
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 2.2e-17 93.6 172 39.0
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 2.2e-17 93.6 172 39.0
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.2e-17 93.6 167 43.1
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 2.9e-17 93.2 164 38.4
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 3.7e-17 92.8 173 39.3
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 3.7e-17 92.8 166 40.4
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.7e-17 92.8 134 46.3
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 4.9e-17 92.4 86 65.1
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.9e-16 90.5 178 41.0
Lj1g0007483 Lotus japonicus HOM05D004654 ORTHO05D005414 1.9e-16 90.5 81 60.5
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 3.2e-16 89.7 173 38.2
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 4.1e-16 89.4 175 37.7
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 5.4e-16 89.0 175 40.6
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 7.1e-16 88.6 171 38.0
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 7.1e-16 88.6 185 42.2
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.2e-15 87.8 78 65.4
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 2.1e-15 87.0 140 42.1
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 2.1e-15 87.0 192 36.5
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.7e-15 86.7 178 41.0
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 4.6e-15 85.9 194 37.1
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 4.6e-15 85.9 124 44.4
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 7.8e-15 85.1 93 53.8
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 7.8e-15 85.1 182 36.3
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.0e-14 84.7 191 37.7
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.7e-14 84.0 180 34.4
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.7e-14 84.0 117 48.7
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 6.6e-14 82.0 172 35.5
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 6.6e-14 82.0 84 52.4
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 6.6e-14 82.0 186 37.1
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 8.6e-14 81.6 169 39.1
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 8.6e-14 81.6 75 53.3
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 8.6e-14 81.6 152 36.2
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 1.1e-13 81.3 199 36.7
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 1.9e-13 80.5 162 38.9
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.5e-13 80.1 184 34.2
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 3.3e-13 79.7 196 38.8
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 3.3e-13 79.7 102 52.0
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.3e-13 79.7 95 50.5
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 5.6e-13 79.0 174 36.8
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 9.5e-13 78.2 90 53.3
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 1.2e-12 77.8 206 34.5
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.2e-12 77.8 168 37.5
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.2e-12 77.8 74 56.8
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.1e-12 77.0 87 52.9
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.1e-12 77.0 87 52.9
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.1e-12 77.0 105 50.5
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.8e-12 76.6 160 39.4
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 2.8e-12 76.6 90 52.2
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.7e-12 75.9 68 58.8
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 4.7e-12 75.9 85 51.8
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 8.1e-12 75.1 184 33.7
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.1e-11 74.7 191 36.1
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.1e-11 74.7 74 56.8
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 2.3e-11 73.6 178 31.5
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 4.0e-11 72.8 198 33.3
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 5.2e-11 72.4 154 37.7
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 5.2e-11 72.4 185 34.1
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 1.5e-10 70.9 180 32.8
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 3.4e-10 69.7 152 34.9
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 7.6e-10 68.6 203 32.0
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 7.6e-10 68.6 129 39.5
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 3.7e-09 66.2 179 33.0
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 4.9e-09 65.9 71 47.9
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 8.4e-09 65.1 145 35.9
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.1e-08 64.7 199 31.2
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.4e-08 64.3 196 32.1
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.9e-08 63.9 201 31.8
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 1.9e-08 63.9 190 32.1
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 3.2e-08 63.2 182 30.8
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 4.1e-08 62.8 162 34.0
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 2.1e-07 60.5 62 54.8
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 2.7e-07 60.1 104 38.5


User provided reference genes

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