Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 2.2e-115 419.1 232 100.0
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 8.3e-78 294.3 219 74.4
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 1.5e-71 273.5 216 70.8
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 3.2e-69 265.8 223 68.6
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 3.2e-69 265.8 223 68.6
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 3.2e-69 265.8 173 80.9
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 3.6e-57 225.7 227 59.0
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 1.8e-56 223.4 219 60.3
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 2.3e-51 206.5 222 55.9
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 6.2e-49 198.4 222 55.4
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 1.1e-45 187.6 186 58.6
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 1.1e-45 187.6 221 53.8
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 7.9e-44 181.4 263 46.0
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 2.3e-43 179.9 229 51.5
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 3.0e-43 179.5 226 51.3
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 3.9e-43 179.1 230 51.3
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 4.3e-42 175.6 225 49.3
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 2.1e-41 173.3 184 55.4
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.1e-41 173.3 225 48.9
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 4.8e-41 172.2 230 48.7
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 4.8e-41 172.2 224 48.7
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 6.2e-41 171.8 139 67.6
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 1.1e-40 171.0 232 46.6
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.8e-40 170.2 227 46.7
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 2.4e-40 169.9 224 48.7
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 4.0e-40 169.1 227 47.6
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 5.3e-40 168.7 228 49.1
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 5.3e-40 168.7 224 48.2
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 9.0e-40 167.9 235 48.5
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 3.4e-39 166.0 228 47.8
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 3.4e-39 166.0 227 49.3
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 5.8e-39 165.2 186 53.2
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 5.8e-39 165.2 210 50.5
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 9.9e-39 164.5 220 49.1
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 1.3e-38 164.1 225 47.6
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 1.3e-38 164.1 185 53.0
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 1.7e-38 163.7 203 51.2
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 1.7e-38 163.7 227 46.3
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 1.7e-38 163.7 217 49.8
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 2.2e-38 163.3 185 52.4
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 2.9e-38 162.9 229 46.7
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.9e-38 162.9 229 46.7
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 3.8e-38 162.5 185 53.5
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 4.9e-38 162.2 228 46.1
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 4.9e-38 162.2 229 46.3
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 1.9e-37 160.2 231 46.8
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 2.4e-37 159.8 204 48.0
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 2.4e-37 159.8 184 52.7
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 4.2e-37 159.1 225 48.4
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 9.3e-37 157.9 224 46.0
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 1.2e-36 157.5 210 50.0
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 1.6e-36 157.1 205 50.2
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.6e-36 157.1 229 45.9
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 2.7e-36 156.4 206 50.0
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 2.7e-36 156.4 206 50.5
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 2.7e-36 156.4 187 51.9
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 3.5e-36 156.0 223 47.5
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 3.5e-36 156.0 209 49.3
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 4.6e-36 155.6 230 46.1
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 4.6e-36 155.6 229 45.4
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.3e-35 154.1 226 44.7
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 1.3e-35 154.1 227 45.8
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.3e-35 154.1 229 45.9
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 1.8e-35 153.7 224 44.6
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 1.1e-34 151.0 225 43.6
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.9e-34 150.2 220 45.0
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 5.6e-34 148.7 224 42.4
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 5.6e-34 148.7 174 52.9
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 7.4e-34 148.3 179 50.3
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 9.6e-34 147.9 224 43.8
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 1.6e-33 147.1 185 48.6
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 2.8e-33 146.4 205 46.8
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 3.7e-33 146.0 182 50.0
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 6.2e-33 145.2 124 64.5
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 6.2e-33 145.2 224 42.4
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 8.2e-33 144.8 175 48.6
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 8.2e-33 144.8 237 45.1
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.4e-32 144.1 230 44.8
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 2.4e-32 143.3 221 44.3
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 6.9e-32 141.7 203 46.3
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 9.0e-32 141.4 211 43.1
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 3.4e-31 139.4 181 51.9
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 3.8e-30 136.0 179 49.7
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 3.5e-28 129.4 180 47.8
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 3.5e-28 129.4 177 48.0
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 3.5e-28 129.4 180 48.3
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 7.9e-28 128.3 224 40.6
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 5.1e-27 125.6 238 41.6
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 1.5e-26 124.0 187 45.5
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 1.9e-26 123.6 214 42.1
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 3.3e-26 122.9 172 46.5
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 9.7e-26 121.3 146 48.6
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 9.7e-26 121.3 215 41.9
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 2.8e-25 119.8 162 47.5
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 3.1e-24 116.3 201 41.3
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 4.1e-24 115.9 201 41.3
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 4.1e-24 115.9 227 40.5
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 4.1e-24 115.9 185 42.7
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 6.9e-24 115.2 187 45.5
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 6.9e-24 115.2 195 42.1
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 6.9e-24 115.2 187 45.5
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 6.9e-24 115.2 126 53.2
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 2.6e-23 113.2 123 55.3
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 2.6e-23 113.2 123 55.3
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 3.4e-23 112.8 195 41.5
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 3.4e-23 112.8 161 45.3
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 4.5e-23 112.5 133 54.9
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 4.5e-23 112.5 177 45.2
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 1.0e-22 111.3 120 53.3
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 1.7e-22 110.5 192 40.6
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 3.8e-22 109.4 127 48.8
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 5.0e-22 109.0 127 48.8
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 6.1e-20 102.1 59 91.5
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 8.8e-19 98.2 216 34.3
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 8.8e-19 98.2 59 83.1
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 1.9e-18 97.1 111 49.5
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 3.1e-16 89.7 63 73.0
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 1.7e-14 84.0 153 39.9
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 6.5e-14 82.0 44 97.7
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 2.5e-13 80.1 66 68.2
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 5.5e-13 79.0 44 93.2
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 2.7e-12 76.6 109 41.3
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 4.7e-12 75.9 102 44.1
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 6.3e-09 65.5 200 31.0
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.8e-08 63.9 43 79.1
TPR.G31524 Trifolium pratense HOM05D005913 ORTHO05D007138 5.3e-08 62.4 33 84.8
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 9.1e-08 61.6 181 32.6
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 5.9e-07 58.9 60 50.0
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 5.9e-07 58.9 99 41.4
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.3e-06 57.8 43 67.4


User provided reference genes

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