Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 3.7e-34 147.5 69 100.0
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 5.8e-19 97.1 58 81.0
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 1.7e-18 95.5 51 88.2
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 4.9e-18 94.0 52 82.7
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 4.9e-18 94.0 51 86.3
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 8.4e-18 93.2 51 84.3
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 8.4e-18 93.2 51 84.3
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 1.9e-17 92.0 51 82.4
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 3.2e-17 91.3 51 82.4
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 3.2e-17 91.3 51 82.4
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 3.2e-17 91.3 51 82.4
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 3.2e-17 91.3 51 82.4
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 4.2e-17 90.9 51 80.4
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 7.1e-17 90.1 51 80.4
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 9.3e-17 89.7 51 80.4
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 1.2e-16 89.4 51 80.4
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 1.2e-16 89.4 51 82.4
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.2e-16 89.4 51 80.4
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.2e-16 89.4 51 80.4
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.2e-16 89.4 51 80.4
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 1.6e-16 89.0 51 80.4
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 1.6e-16 89.0 51 80.4
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.6e-16 89.0 55 74.5
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 1.6e-16 89.0 51 80.4
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.6e-16 89.0 51 80.4
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.6e-16 89.0 51 80.4
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.6e-16 89.0 51 80.4
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.6e-16 89.0 52 76.9
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 2.1e-16 88.6 49 81.6
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 2.1e-16 88.6 48 83.3
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 2.7e-16 88.2 51 80.4
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 2.7e-16 88.2 51 78.4
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.7e-16 88.2 51 80.4
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.7e-16 88.2 51 78.4
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 2.7e-16 88.2 51 78.4
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 2.7e-16 88.2 51 78.4
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 2.7e-16 88.2 51 78.4
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 4.6e-16 87.4 52 76.9
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 4.6e-16 87.4 52 76.9
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 4.6e-16 87.4 52 76.9
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 4.6e-16 87.4 52 76.9
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 4.6e-16 87.4 52 76.9
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 4.6e-16 87.4 52 76.9
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 4.6e-16 87.4 51 78.4
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 4.6e-16 87.4 51 78.4
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 4.6e-16 87.4 51 78.4
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 6.0e-16 87.0 51 78.4
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 6.0e-16 87.0 51 76.5
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 6.0e-16 87.0 52 75.0
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 6.0e-16 87.0 53 73.6
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 6.0e-16 87.0 51 78.4
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 7.8e-16 86.7 51 78.4
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 7.8e-16 86.7 51 78.4
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 7.8e-16 86.7 51 78.4
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 7.8e-16 86.7 51 78.4
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 7.8e-16 86.7 51 78.4
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 7.8e-16 86.7 51 78.4
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 7.8e-16 86.7 51 78.4
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 7.8e-16 86.7 51 78.4
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 7.8e-16 86.7 51 78.4
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 7.8e-16 86.7 51 76.5
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.0e-15 86.3 55 72.7
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 1.3e-15 85.9 49 77.6
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 1.7e-15 85.5 84 53.6
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 1.7e-15 85.5 51 78.4
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 1.7e-15 85.5 51 76.5
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 1.7e-15 85.5 51 76.5
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 1.7e-15 85.5 51 78.4
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 2.3e-15 85.1 51 76.5
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 2.3e-15 85.1 51 76.5
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 2.3e-15 85.1 51 76.5
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 2.3e-15 85.1 51 76.5
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 2.3e-15 85.1 51 76.5
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 2.3e-15 85.1 51 76.5
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 3.0e-15 84.7 51 74.5
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 3.0e-15 84.7 51 74.5
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 3.0e-15 84.7 47 83.0
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 3.0e-15 84.7 47 83.0
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 3.0e-15 84.7 51 76.5
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 3.0e-15 84.7 51 76.5
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 3.9e-15 84.3 51 74.5
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 3.9e-15 84.3 51 74.5
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 5.1e-15 84.0 51 74.5
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 6.6e-15 83.6 51 74.5
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 6.6e-15 83.6 51 74.5
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 6.6e-15 83.6 51 74.5
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 8.7e-15 83.2 51 74.5
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 1.1e-14 82.8 57 66.7
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 1.9e-14 82.0 51 72.5
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 1.9e-14 82.0 51 72.5
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 1.9e-14 82.0 51 72.5
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 2.5e-14 81.6 51 72.5
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 2.5e-14 81.6 51 72.5
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 3.3e-14 81.3 51 74.5
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 4.3e-14 80.9 51 72.5
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 4.3e-14 80.9 51 72.5
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 1.6e-13 79.0 51 70.6
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 2.1e-13 78.6 55 65.5
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 2.1e-13 78.6 52 67.3
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 3.6e-13 77.8 51 70.6
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 4.8e-13 77.4 51 68.6
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 4.8e-13 77.4 51 68.6
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 4.8e-13 77.4 46 80.4
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 8.1e-13 76.6 44 79.5
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 8.1e-13 76.6 50 72.0
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 1.1e-12 76.3 51 68.6
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 1.5e-11 72.4 51 62.7
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 3.4e-11 71.2 41 78.0
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 7.6e-11 70.1 48 64.6
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 7.6e-11 70.1 37 83.8
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 2.2e-10 68.6 37 83.8
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 3.8e-10 67.8 51 58.8
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 6.4e-10 67.0 51 60.8
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 1.9e-09 65.5 36 80.6
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 3.2e-09 64.7 51 56.9
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 3.2e-09 64.7 36 77.8
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 4.2e-09 64.3 48 58.3
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 9.3e-09 63.2 37 73.0
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 9.3e-09 63.2 61 50.8
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 9.3e-09 63.2 37 73.0
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.2e-08 62.8 52 55.8
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.6e-08 62.4 47 57.4
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 2.7e-08 61.6 36 75.0


User provided reference genes

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