Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37210 Trifolium pratense HOM05D000533 ORTHO05D002807 3.0e-84 315.1 154 100.0
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 7.3e-30 134.4 73 93.2
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 7.3e-30 134.4 73 93.2
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 7.3e-30 134.4 73 93.2
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 1.2e-29 133.7 73 91.8
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 1.2e-29 133.7 73 91.8
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 1.2e-29 133.7 73 91.8
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 1.2e-29 133.7 73 91.8
Psat6g182640 Pisum sativum HOM05D000533 ORTHO05D002807 1.2e-29 133.7 73 91.8
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 1.2e-29 133.7 73 91.8
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 3.6e-29 132.1 73 91.8
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 1.8e-28 129.8 73 89.0
Psat4g172360 Pisum sativum HOM05D000533 ORTHO05D002807 2.4e-28 129.4 73 89.0
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 2.0e-27 126.3 73 86.3
arahy.Tifrunner.gnm1.ann1.510BCU Arachis hypogaea HOM05D000533 ORTHO05D002807 2.0e-27 126.3 73 86.3
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 2.0e-27 126.3 73 86.3
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 2.0e-27 126.3 73 87.7
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 2.0e-27 126.3 73 87.7
Psat0s411g0120 Pisum sativum HOM05D000533 ORTHO05D002807 9.9e-27 124.0 72 84.7
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 1.4e-25 120.2 73 82.2
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 1.4e-25 120.2 73 80.8
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 1.4e-25 120.2 73 80.8
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 1.9e-25 119.8 73 80.8
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 1.9e-25 119.8 73 80.8
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 1.9e-25 119.8 73 80.8
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 1.9e-25 119.8 73 80.8
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 4.2e-25 118.6 73 79.5
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 4.2e-25 118.6 73 79.5
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 4.2e-25 118.6 73 79.5
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 5.4e-25 118.2 72 80.6
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 7.1e-25 117.9 73 75.3
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 9.3e-25 117.5 73 79.5
MELO3C027055.2 Cucumis melo HOM05D000533 ORTHO05D002807 1.2e-24 117.1 73 78.1
FAN01G2990 Fragaria x ananassa HOM05D000533 ORTHO05D002807 1.2e-24 117.1 73 78.1
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 1.2e-24 117.1 73 78.1
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 1.2e-24 117.1 73 78.1
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-24 117.1 73 78.1
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-24 117.1 73 78.1
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-24 117.1 73 78.1
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-24 117.1 73 78.1
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-24 117.1 73 78.1
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-24 117.1 73 78.1
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-24 117.1 73 78.1
Nn064s42206 Nelumbo nucifera HOM05D000533 ORTHO05D002807 2.1e-24 116.3 72 79.2
Nn7g37744 Nelumbo nucifera HOM05D000533 ORTHO05D002807 2.1e-24 116.3 72 79.2
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 2.7e-24 115.9 73 78.1
RcHm_v2.0_Chr3g0470801 Rosa chinensis HOM05D000533 ORTHO05D002807 3.5e-24 115.5 73 78.1
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 4.6e-24 115.2 73 76.7
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 6.0e-24 114.8 73 78.1
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 6.0e-24 114.8 73 76.7
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 6.0e-24 114.8 73 74.0
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 6.0e-24 114.8 73 75.3
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 6.0e-24 114.8 73 75.3
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 1.3e-23 113.6 73 78.1
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 1.3e-23 113.6 73 78.1
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 1.3e-23 113.6 73 72.6
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 1.7e-23 113.2 73 78.1
Nitab4.5_0007400g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 3.0e-23 112.5 73 76.7
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.0e-23 112.5 73 76.7
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.0e-23 112.5 73 76.7
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.0e-23 112.5 73 76.7
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.0e-23 112.5 73 76.7
CAN.G1470.9 Capsicum annuum HOM05D000533 ORTHO05D002807 5.1e-23 111.7 73 76.7
Ah.10g027030 Amaranthus hybridus HOM05D000533 ORTHO05D002807 1.1e-22 110.5 73 76.7
EL10Ac6g14288 Beta vulgaris HOM05D000533 ORTHO05D002807 1.5e-22 110.2 73 76.7
EL10As15g24097 Beta vulgaris HOM05D000533 ORTHO05D002807 1.5e-22 110.2 73 76.7
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 2.5e-22 109.4 73 75.3
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 2.5e-22 109.4 73 75.3
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 2.5e-22 109.4 73 75.3
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.5e-22 109.4 73 69.9
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 2.5e-22 109.4 72 72.2
CAN.G127.11 Capsicum annuum HOM05D000533 ORTHO05D002807 9.6e-22 107.5 73 74.0
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 1.3e-21 107.1 72 73.6
C05p53830 Brassica napus HOM05D000533 ORTHO05D002807 1.3e-21 107.1 73 72.6
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 1.3e-21 107.1 73 72.6
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 1.3e-21 107.1 73 72.6
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 1.3e-21 107.1 73 72.6
Potri.013G074800 Populus trichocarpa HOM05D000533 ORTHO05D002807 1.3e-21 107.1 73 76.7
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.1e-21 106.3 73 68.5
Gohir.A06G090050 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.1e-21 106.3 73 68.5
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.1e-21 106.3 73 68.5
CAN.G965.4 Capsicum annuum HOM05D000533 ORTHO05D002807 2.8e-21 105.9 73 74.0
Gohir.D06G147033 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.8e-21 105.9 73 68.5
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 2.8e-21 105.9 73 69.9
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 3.6e-21 105.5 73 74.0
BraSC59t46529Z Brassica rapa HOM05D000533 ORTHO05D002807 4.8e-21 105.1 81 69.1
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 6.2e-21 104.8 73 72.6
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 8.1e-21 104.4 73 71.2
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 8.1e-21 104.4 73 71.2
BolSC46t60955H Brassica oleracea HOM05D000533 ORTHO05D002807 8.1e-21 104.4 73 71.2
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 8.1e-21 104.4 73 71.2
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 3.1e-20 102.4 73 69.9
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 4.0e-20 102.1 73 67.1
Nitab4.5_0007979g0100 Nicotiana tabacum HOM05D000533 ORTHO05D002807 4.0e-20 102.1 73 72.6
Nitab4.5_0006502g0040 Nicotiana tabacum HOM05D000533 ORTHO05D002807 6.9e-20 101.3 73 71.2
CAN.G30.8 Capsicum annuum HOM05D000533 ORTHO05D002807 1.5e-19 100.1 73 68.5
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 4.4e-19 98.6 68 69.1
Gorai.003G091000 Gossypium raimondii HOM05D000533 ORTHO05D002807 9.9e-19 97.4 73 64.4
SEGI_20811 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 1.3e-18 97.1 72 63.9
Psat1g104960 Pisum sativum HOM05D000533 ORTHO05D002807 1.4e-17 93.6 81 63.0
Medtr3g113820 Medicago truncatula HOM05D000533 ORTHO05D002807 7.1e-17 91.3 73 69.9
Sopen02g002710 Solanum pennellii HOM05D000533 ORTHO05D002807 2.7e-16 89.4 72 69.4
Solyc02g011800.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 1.0e-15 87.4 76 65.8
Sed0007463 Sechium edule HOM05D000533 ORTHO05D002807 1.3e-15 87.0 73 64.4
Hund28342 Selenicereus undatus HOM05D000533 ORTHO05D002807 1.7e-15 86.7 55 78.2
Hund29093 Selenicereus undatus HOM05D000533 ORTHO05D002807 1.7e-15 86.7 55 78.2
Hund30926 Selenicereus undatus HOM05D000533 ORTHO05D002807 1.7e-15 86.7 55 78.2
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.0e-15 85.9 72 61.1
MELO3C031836.2 Cucumis melo HOM05D000533 ORTHO05D002807 3.9e-15 85.5 73 58.9
Nitab4.5_0000660g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 5.1e-15 85.1 82 61.0
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 4.3e-14 82.0 54 75.9
BolSC45t60906H Brassica oleracea HOM05D000533 ORTHO05D002807 4.0e-12 75.5 70 58.6
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 1.2e-11 73.9 73 54.8
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 3.4e-11 72.4 73 50.7
PGSC0003DMG402008783 Solanum tuberosum HOM05D000533 ORTHO05D002807 3.4e-11 72.4 51 70.6
Gorai.009G398900 Gossypium raimondii HOM05D000533 ORTHO05D002807 6.4e-10 68.2 73 50.7
HanXRQChr17g0557741 Helianthus annuus HOM05D000533 ORTHO05D002807 1.1e-09 67.4 41 75.6
Psat0s1586g0320 Pisum sativum HOM05D000533 ORTHO05D002807 2.4e-09 66.2 37 86.5
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 5.5e-09 65.1 73 52.1
FAN09G0092 Fragaria x ananassa HOM05D000107 ORTHO05D002484 7.1e-09 64.7 34 88.2
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 7.1e-09 64.7 42 81.0
Gohir.A01G139542 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.2e-08 63.9 73 47.9
Solyc11g021233.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 1.2e-08 63.9 63 54.0
SGA_v2.0_scaffold150G36657 Striga asiatica HOM05D000533 ORTHO05D002807 2.1e-08 63.2 43 65.1
Gorai.005G106600 Gossypium raimondii HOM05D000533 ORTHO05D002807 3.5e-08 62.4 73 47.9
BraSC25t45913Z Brassica rapa HOM05D000533 ORTHO05D002807 1.1e-06 57.4 46 63.0
THA.LOC104820711 Tarenaya hassleriana HOM05D000533 ORTHO05D002807 1.5e-06 57.0 75 33.3
C02p28820 Brassica napus HOM05D000533 ORTHO05D002807 3.3e-06 55.8 46 63.0
BolC2t08927H Brassica oleracea HOM05D000533 ORTHO05D002807 3.3e-06 55.8 46 63.0
BolC2t10600H Brassica oleracea HOM05D000533 ORTHO05D002807 7.4e-06 54.7 46 60.9
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 7.4e-06 54.7 46 60.9
CAN.G262.8 Capsicum annuum HOM05D000533 ORTHO05D002807 7.4e-06 54.7 46 63.0


User provided reference genes

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