Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 6.8e-66 253.8 127 100.0
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 2.4e-55 218.8 148 79.1
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 5.4e-55 217.6 147 76.9
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 2.1e-54 215.7 147 78.2
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 7.8e-54 213.8 147 78.2
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 1.7e-53 212.6 147 77.6
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 3.0e-53 211.8 147 77.6
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 3.3e-52 208.4 147 74.8
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 2.1e-51 205.7 147 74.8
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 2.1e-51 205.7 146 74.0
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 3.6e-51 204.9 147 74.8
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 3.6e-51 204.9 147 74.8
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 3.6e-51 204.9 147 74.8
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 1.1e-50 203.4 147 72.1
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 1.1e-50 203.4 147 74.1
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 1.8e-50 202.6 147 74.1
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 4.0e-50 201.4 151 73.5
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 5.2e-50 201.1 147 72.8
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 5.2e-50 201.1 147 72.8
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 6.9e-50 200.7 147 73.5
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 9.0e-50 200.3 147 73.5
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 1.2e-49 199.9 147 72.8
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 1.2e-49 199.9 147 72.1
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.5e-49 199.5 147 71.4
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.5e-49 199.5 147 71.4
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.5e-49 199.5 147 71.4
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.5e-49 199.5 147 72.8
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 2.6e-49 198.7 147 72.8
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 2.6e-49 198.7 147 72.1
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.4e-49 198.4 147 74.1
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 3.4e-49 198.4 147 70.7
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 7.6e-49 197.2 147 72.1
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 7.6e-49 197.2 147 72.1
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 7.6e-49 197.2 147 70.7
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 9.9e-49 196.8 147 70.7
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 1.3e-48 196.4 147 72.1
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 1.3e-48 196.4 147 72.1
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 1.3e-48 196.4 147 72.1
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 1.3e-48 196.4 147 72.1
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 1.3e-48 196.4 147 70.7
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 1.3e-48 196.4 147 70.7
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 1.3e-48 196.4 147 74.1
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 1.3e-48 196.4 147 72.1
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.7e-48 196.1 147 70.7
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 1.7e-48 196.1 147 71.4
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.7e-48 196.1 147 73.5
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 2.2e-48 195.7 147 71.4
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 2.2e-48 195.7 147 72.1
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 2.2e-48 195.7 148 73.0
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 2.9e-48 195.3 147 71.4
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 2.9e-48 195.3 140 75.0
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 3.8e-48 194.9 147 70.1
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 3.8e-48 194.9 147 71.4
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 3.8e-48 194.9 147 71.4
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 3.8e-48 194.9 147 72.8
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 3.8e-48 194.9 147 72.1
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 3.8e-48 194.9 147 72.1
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 4.9e-48 194.5 147 69.4
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 4.9e-48 194.5 147 70.7
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 4.9e-48 194.5 147 71.4
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 4.9e-48 194.5 147 71.4
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 6.4e-48 194.1 147 70.7
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 6.4e-48 194.1 147 71.4
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.4e-48 194.1 147 72.8
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 8.4e-48 193.7 147 71.4
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 8.4e-48 193.7 147 70.1
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 8.4e-48 193.7 147 70.7
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 8.4e-48 193.7 147 71.4
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 8.4e-48 193.7 147 72.1
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 8.4e-48 193.7 147 72.1
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 1.1e-47 193.4 147 71.4
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 1.1e-47 193.4 147 71.4
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 1.1e-47 193.4 147 71.4
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 1.1e-47 193.4 147 71.4
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.1e-47 193.4 147 72.1
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 1.4e-47 193.0 147 70.7
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 1.4e-47 193.0 147 70.7
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.4e-47 193.0 147 70.7
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.4e-47 193.0 147 72.1
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.9e-47 192.6 147 70.1
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 1.9e-47 192.6 148 72.3
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 1.9e-47 192.6 148 72.3
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.9e-47 192.6 147 72.8
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 1.9e-47 192.6 147 72.8
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 1.9e-47 192.6 148 71.6
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 2.4e-47 192.2 147 70.7
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 2.4e-47 192.2 147 70.7
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 2.4e-47 192.2 146 70.5
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 2.4e-47 192.2 148 70.9
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 3.2e-47 191.8 147 70.7
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 3.2e-47 191.8 147 70.7
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 3.2e-47 191.8 147 70.7
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 3.2e-47 191.8 147 70.7
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 5.4e-47 191.0 147 70.7
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 5.4e-47 191.0 147 70.7
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 5.4e-47 191.0 147 70.1
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 5.4e-47 191.0 147 70.1
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 5.4e-47 191.0 147 70.1
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 5.4e-47 191.0 147 71.4
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 5.4e-47 191.0 147 71.4
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 5.4e-47 191.0 148 70.3
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 7.1e-47 190.7 147 71.4
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 7.1e-47 190.7 148 70.3
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 7.1e-47 190.7 147 70.7
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 9.3e-47 190.3 147 70.1
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 9.3e-47 190.3 147 70.1
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 9.3e-47 190.3 147 68.7
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 9.3e-47 190.3 147 71.4
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 9.3e-47 190.3 147 70.1
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 1.6e-46 189.5 147 70.1
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.6e-46 189.5 147 69.4
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 2.1e-46 189.1 147 70.1
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 2.1e-46 189.1 147 70.1
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 2.1e-46 189.1 147 69.4
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 2.7e-46 188.7 147 69.4
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.7e-46 188.7 147 70.1
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 3.5e-46 188.3 147 68.7
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 4.6e-46 188.0 147 68.7
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 6.0e-46 187.6 148 71.6
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 1.3e-45 186.4 147 68.7
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 1.3e-45 186.4 147 70.1
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.7e-45 186.0 147 69.4
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 2.3e-45 185.7 147 68.0
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 2.3e-45 185.7 147 68.0
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 2.3e-45 185.7 148 68.9
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 3.9e-45 184.9 139 74.1
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 6.6e-45 184.1 148 70.3
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 8.7e-45 183.7 147 68.0
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 1.5e-44 183.0 148 68.2
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 2.5e-44 182.2 145 69.0
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 2.5e-44 182.2 147 68.0
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 2.5e-44 182.2 147 68.7
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 7.3e-44 180.6 147 66.0
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 7.3e-44 180.6 147 68.0
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 7.3e-44 180.6 143 69.9
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.3e-43 179.9 148 67.6
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 1.3e-43 179.9 147 68.0
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.6e-43 179.5 147 63.9
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 2.1e-43 179.1 148 66.9
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 3.6e-43 178.3 147 65.3
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 1.4e-42 176.4 146 65.1
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 6.9e-42 174.1 148 64.9
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 6.9e-42 174.1 147 65.3
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 9.0e-42 173.7 147 62.6
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 5.8e-41 171.0 138 67.4
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 3.8e-40 168.3 144 63.2
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 6.4e-40 167.5 145 63.4
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 6.4e-40 167.5 145 62.1
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 3.2e-39 165.2 141 64.5
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 7.1e-39 164.1 147 65.3
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 1.3e-37 159.8 147 62.6
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 1.3e-35 153.3 103 76.7
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 6.2e-35 151.0 100 79.0
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 1.1e-34 150.2 118 66.9
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 6.9e-34 147.5 100 75.0
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 1.5e-33 146.4 115 70.4
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 3.8e-32 141.7 144 57.6
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 2.4e-31 139.0 87 79.3
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 5.1e-29 131.3 87 77.0
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 1.6e-27 126.3 84 70.2
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.6e-27 126.3 140 50.0
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 6.9e-26 120.9 137 49.6
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.7e-24 116.3 76 72.4
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 3.8e-24 115.2 147 48.3
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 4.9e-24 114.8 149 51.0
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 2.5e-20 102.4 147 48.3
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 3.3e-20 102.1 147 48.3
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 3.4e-17 92.0 147 48.3
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 4.5e-17 91.7 63 69.8
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 6.5e-16 87.8 70 67.1
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 2.1e-14 82.8 126 38.1
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 1.4e-10 70.1 60 65.0
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 1.0e-08 63.9 33 87.9
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 2.9e-08 62.4 68 44.1
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 7.9e-06 54.3 121 34.7


User provided reference genes

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