Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 4.5e-186 654.4 333 100.0
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 2.7e-162 575.5 333 90.4
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 1.3e-156 556.6 333 88.6
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.2e-151 540.0 334 84.7
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 3.9e-129 465.3 340 73.2
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 5.1e-129 464.9 338 73.1
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 1.4e-126 456.8 339 72.6
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 1.3e-124 450.3 334 74.0
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 2.2e-124 449.5 342 69.9
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 1.7e-111 406.8 310 67.4
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 9.1e-110 401.0 310 71.3
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 9.1e-110 401.0 310 71.3
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.0e-109 399.8 329 64.4
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 5.9e-109 398.3 314 67.2
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.3e-108 397.1 341 64.5
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 2.2e-108 396.4 341 63.6
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 2.9e-108 396.0 308 68.8
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 8.5e-108 394.4 307 67.8
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 4.2e-107 392.1 313 67.7
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 5.5e-107 391.7 309 66.7
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.6e-106 389.0 337 63.2
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.4e-105 387.1 337 62.9
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 6.7e-105 384.8 308 63.6
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 6.7e-105 384.8 325 62.5
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.3e-104 382.5 310 64.8
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 4.4e-104 382.1 321 65.1
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.8e-103 379.4 325 61.2
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.2e-103 377.9 318 61.3
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 2.4e-102 376.3 319 61.1
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 7.0e-102 374.8 298 66.8
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 4.5e-101 372.1 306 63.7
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 7.7e-101 371.3 293 65.9
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 2.2e-100 369.8 315 61.9
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 2.2e-100 369.8 249 73.1
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.2e-98 364.0 332 60.2
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.2e-98 364.0 310 61.0
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 2.1e-98 363.2 332 59.9
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 2.7e-98 362.8 253 71.9
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 6.1e-98 361.7 308 59.1
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 6.1e-98 361.7 308 60.4
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 8.0e-98 361.3 310 60.0
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 1.0e-97 360.9 308 61.7
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 1.8e-97 360.1 324 59.9
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 2.3e-97 359.8 311 59.2
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 2.3e-97 359.8 296 64.2
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 6.7e-97 358.2 308 59.7
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 6.7e-97 358.2 310 60.3
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 8.8e-97 357.8 310 60.0
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 8.8e-97 357.8 313 62.9
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 1.1e-96 357.5 308 59.4
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.1e-96 357.5 308 59.7
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 1.1e-96 357.5 308 59.4
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.5e-96 357.1 304 61.2
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.5e-96 357.1 299 63.9
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 2.6e-96 356.3 308 59.7
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 4.4e-96 355.5 310 60.3
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 7.4e-96 354.8 308 59.4
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 7.4e-96 354.8 332 56.0
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.2e-95 353.2 306 60.5
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 2.2e-95 353.2 324 59.6
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 2.8e-95 352.8 308 58.8
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 5.3e-94 348.6 316 59.5
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 4.5e-93 345.5 294 63.3
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.3e-92 344.0 306 58.5
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 1.3e-92 344.0 293 62.8
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.2e-92 343.2 306 58.5
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.9e-92 342.8 307 60.6
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.9e-92 342.8 293 62.5
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.0e-92 342.0 298 61.4
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 8.5e-92 341.3 303 59.4
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.1e-91 340.9 248 68.1
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.1e-91 340.9 297 59.9
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.9e-91 340.1 302 58.3
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 1.9e-91 340.1 290 62.1
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 3.6e-90 335.9 296 60.5
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.0e-89 334.3 310 58.1
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 1.8e-89 333.6 337 54.0
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.3e-89 333.2 314 57.0
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 1.2e-88 330.9 329 54.1
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.5e-88 330.5 308 56.8
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 2.0e-88 330.1 303 56.4
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.3e-87 327.4 323 56.3
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 1.2e-85 320.9 305 57.0
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.6e-85 320.5 293 59.4
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 1.6e-85 320.5 280 58.2
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 2.7e-85 319.7 333 54.7
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.5e-85 319.3 317 53.3
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 4.5e-85 318.9 311 52.1
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 5.9e-85 318.5 321 54.8
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 5.0e-84 315.5 297 55.6
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 6.5e-84 315.1 303 56.8
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 8.5e-84 314.7 310 57.4
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.5e-83 313.9 310 53.5
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-83 313.9 254 63.0
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 1.5e-83 313.9 320 55.3
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 1.9e-83 313.5 315 54.6
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 3.2e-83 312.8 327 53.5
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 4.2e-83 312.4 296 55.1
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.2e-83 312.4 286 57.7
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 4.2e-83 312.4 289 60.6
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 5.5e-83 312.0 306 54.2
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.5e-83 312.0 254 62.6
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 7.2e-83 311.6 248 64.1
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 9.4e-83 311.2 327 53.2
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.6e-82 310.5 330 50.3
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.1e-82 310.1 276 57.2
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 2.7e-82 309.7 342 52.6
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.7e-82 308.9 311 55.0
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.0e-82 308.1 330 50.3
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.0e-81 307.8 330 50.3
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 6.8e-81 305.1 304 52.0
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 6.8e-81 305.1 344 54.4
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 8.8e-81 304.7 249 60.6
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-80 303.9 304 51.3
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.0e-80 303.5 304 53.9
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 4.4e-80 302.4 314 53.2
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 7.5e-80 301.6 293 53.2
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.5e-80 301.6 288 53.1
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 2.8e-79 299.7 259 57.1
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.8e-79 299.7 318 54.4
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 2.8e-79 299.7 258 58.9
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 4.8e-79 298.9 249 59.0
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.4e-78 297.4 247 58.3
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.8e-78 297.0 273 54.6
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 1.8e-78 297.0 280 54.3
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.1e-78 295.8 362 48.6
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 5.4e-78 295.4 335 50.7
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 9.1e-78 294.7 245 61.6
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.6e-77 293.9 266 56.8
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 4.5e-77 292.4 292 53.4
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 5.9e-77 292.0 325 49.2
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 7.2e-75 285.0 319 49.5
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 7.2e-75 285.0 279 57.7
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 3.6e-74 282.7 339 49.3
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 8.0e-74 281.6 333 47.7
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 5.2e-73 278.9 248 53.2
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 6.8e-73 278.5 248 53.6
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 5.7e-72 275.4 250 56.4
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 2.8e-71 273.1 342 43.9
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 4.9e-71 272.3 250 53.6
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 8.3e-71 271.6 294 48.6
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 8.3e-71 271.6 305 46.9
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 2.4e-70 270.0 272 50.0
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 2.4e-70 270.0 252 54.0
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 5.4e-70 268.9 291 48.1
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 1.2e-69 267.7 333 45.3
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 3.5e-69 266.2 293 48.5
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 1.0e-68 264.6 240 55.0
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.3e-68 263.5 279 48.4
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 5.0e-68 262.3 160 75.6
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 8.0e-66 255.0 300 46.7
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 2.3e-65 253.4 253 53.4
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.9e-63 246.5 216 64.8
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 2.0e-61 240.4 157 71.3
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 5.0e-60 235.7 178 63.5
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.3e-55 221.1 160 63.8
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 2.9e-55 219.9 222 51.4
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.7e-55 219.5 151 73.5
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.1e-54 218.0 219 51.6
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 4.7e-50 202.6 204 54.9
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 6.0e-45 185.7 234 47.4
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 9.6e-43 178.3 238 45.0
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 4.7e-42 176.0 257 45.1
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 1.4e-41 174.5 216 47.7
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 1.1e-38 164.9 241 36.9
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 4.3e-35 152.9 127 66.9
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.5e-32 144.4 89 76.4
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 7.6e-32 142.1 233 40.3
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.9e-27 127.5 80 76.2
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.6e-26 124.4 104 61.5
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 3.2e-22 110.2 77 63.6
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 5.4e-22 109.4 83 65.1
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.2e-21 108.2 77 70.1
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.0e-15 88.6 56 75.0
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 2.1e-13 80.9 114 36.8


User provided reference genes

Program Settings