Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37100 Trifolium pratense HOM05D000535 ORTHO05D000427 9.9e-39 162.9 79 100.0
TPR.G28351 Trifolium pratense HOM05D000535 ORTHO05D000427 5.2e-32 140.6 75 90.7
Medtr0100s0150 Medicago truncatula HOM05D000535 ORTHO05D000427 2.9e-30 134.8 75 85.3
TPR.G3057 Trifolium pratense HOM05D000535 ORTHO05D000427 2.9e-30 134.8 74 86.5
TPR.G16475 Trifolium pratense HOM05D000535 ORTHO05D000427 8.4e-30 133.3 73 87.7
TPR.G17980 Trifolium pratense HOM05D000535 ORTHO05D000427 1.4e-29 132.5 74 86.5
Medtr0084s0030 Medicago truncatula HOM05D000535 ORTHO05D000427 2.4e-29 131.7 75 82.7
Medtr0302s0030 Medicago truncatula HOM05D000535 ORTHO05D000427 3.2e-29 131.3 75 82.7
Medtr0211s0080 Medicago truncatula HOM05D000535 ORTHO05D000427 7.1e-29 130.2 75 82.7
Medtr3g014820 Medicago truncatula HOM05D000535 ORTHO05D000427 4.3e-26 120.9 75 74.7
Medtr3g014870 Medicago truncatula HOM05D000535 ORTHO05D000427 8.1e-25 116.7 75 74.7
Psat4g160080 Pisum sativum HOM05D000535 ORTHO05D000427 1.8e-24 115.5 73 72.6
Psat4g138880 Pisum sativum HOM05D000535 ORTHO05D000427 1.5e-23 112.5 74 73.0
Medtr8g461050 Medicago truncatula HOM05D000535 ORTHO05D000427 2.9e-22 108.2 75 73.3
Ca_24100_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 4.2e-21 104.4 68 72.1
Ca_09174_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 1.2e-20 102.8 71 69.0
Medtr8g060550 Medicago truncatula HOM05D000535 ORTHO05D000427 1.6e-20 102.4 70 72.9
Medtr8g461690 Medicago truncatula HOM05D000535 ORTHO05D000427 1.6e-20 102.4 70 72.9
Ca_26713_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 3.5e-20 101.3 71 67.6
Ca_26714_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 3.5e-20 101.3 71 67.6
Ca_26715_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 3.5e-20 101.3 71 67.6
Ca_09173_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 1.3e-19 99.4 74 63.5
Psat4g138920 Pisum sativum HOM05D000535 ORTHO05D000427 1.8e-16 89.0 57 70.2
Medtr7g108815 Medicago truncatula HOM05D000535 ORTHO05D000427 5.3e-16 87.4 75 60.0
TPR.G6065 Trifolium pratense HOM05D000535 ORTHO05D000427 6.9e-16 87.0 73 60.3
Medtr8g059790 Medicago truncatula HOM05D000535 ORTHO05D000427 9.0e-16 86.7 64 64.1
TPR.G6098 Trifolium pratense HOM05D000535 ORTHO05D000427 1.5e-15 85.9 74 58.1
Glyma.08G235400 Glycine max HOM05D000535 ORTHO05D000427 7.6e-15 83.6 60 60.0
Phvul.011G166500 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 3.8e-14 81.3 78 52.6
Phvul.011G169900 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 6.4e-14 80.5 78 52.6
TPR.G16491 Trifolium pratense HOM05D000535 ORTHO05D000427 6.4e-14 80.5 66 59.1
Glyma.15G211500 Glycine max HOM05D000535 ORTHO05D000427 2.4e-13 78.6 60 55.0
VMungo1127G0967 Vigna mungo HOM05D000535 ORTHO05D000427 3.2e-13 78.2 77 50.6
Phvul.011G169800 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 9.3e-13 76.6 73 49.3
Glyma.08G235300 Glycine max HOM05D000535 ORTHO05D000427 3.5e-12 74.7 77 46.8
Lalb_Chr19g0133691 Lupinus albus HOM05D000535 ORTHO05D000427 3.0e-11 71.6 73 42.5
Psat1g007640 Pisum sativum HOM05D000535 ORTHO05D000427 5.6e-10 67.4 65 47.7
Lj3g0004853 Lotus japonicus HOM05D000535 ORTHO05D000427 9.6e-10 66.6 76 46.1
Glyma.12G234800 Glycine max HOM05D000535 ORTHO05D000427 4.8e-09 64.3 77 40.3
Ca_03923_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 1.1e-08 63.2 79 43.0
Lalb_Chr03g0031361 Lupinus albus HOM05D000535 ORTHO05D000427 1.1e-08 63.2 64 46.9
TPR.G34999 Trifolium pratense HOM05D000535 ORTHO05D000427 1.4e-08 62.8 65 41.5
RcHm_v2.0_Chr5g0029081 Rosa chinensis HOM05D000535 ORTHO05D000427 2.4e-08 62.0 65 43.1
Psat1g008000 Pisum sativum HOM05D000535 ORTHO05D000427 5.3e-08 60.8 79 41.8
FAN11G2490 Fragaria x ananassa HOM05D000535 ORTHO05D000427 6.9e-08 60.5 66 40.9
FAN16G2894 Fragaria x ananassa HOM05D000535 ORTHO05D000427 6.9e-08 60.5 66 40.9
AUR62028778 Chenopodium quinoa HOM05D000535 ORTHO05D000427 2.6e-07 58.5 71 43.7
Haze_08461 Corylus avellana HOM05D000535 ORTHO05D000427 3.4e-07 58.2 67 41.8
Glyma.12G234700 Glycine max HOM05D000535 ORTHO05D000427 3.4e-07 58.2 75 42.7
RcHm_v2.0_Chr5g0029031 Rosa chinensis HOM05D000535 ORTHO05D000427 4.5e-07 57.8 61 44.3
TPR.G35003 Trifolium pratense HOM05D000535 ORTHO05D000427 4.5e-07 57.8 67 41.8
Prupe.4G155200 Prunus persica HOM05D000535 ORTHO05D000427 7.6e-07 57.0 65 41.5
CANSAT56G4213 Cannabis sativa HOM05D000535 ORTHO05D000427 9.9e-07 56.6 60 45.0
Medtr2g073010 Medicago truncatula HOM05D000535 ORTHO05D000427 9.9e-07 56.6 79 40.5
Cfa019506 Carpinus fangiana HOM05D000535 ORTHO05D000427 1.3e-06 56.2 68 39.7
CiPaw.11G155200 Carya illinoinensis HOM05D000535 ORTHO05D000427 1.7e-06 55.8 72 38.9
AUR62028777 Chenopodium quinoa HOM05D000535 ORTHO05D000427 1.7e-06 55.8 71 43.7
MD11G1269400 Malus domestica HOM05D000535 ORTHO05D000427 1.7e-06 55.8 62 40.3
FvH4_3g17480 Fragaria vesca HOM05D000535 ORTHO05D000427 2.2e-06 55.5 61 45.9
FAN11G0650 Fragaria x ananassa HOM05D000535 ORTHO05D000427 2.2e-06 55.5 61 45.9
FAN16G2271 Fragaria x ananassa HOM05D000535 ORTHO05D000427 2.2e-06 55.5 61 45.9
MD03G1251400 Malus domestica HOM05D000535 ORTHO05D000427 3.8e-06 54.7 64 39.1
FAN25G3174 Fragaria x ananassa HOM05D000535 ORTHO05D000427 4.9e-06 54.3 61 44.3
Manes.02G083500 Manihot esculenta HOM05D000535 ORTHO05D000427 6.4e-06 53.9 57 45.6
Potri.007G111700 Populus trichocarpa HOM05D000535 ORTHO05D000427 6.4e-06 53.9 64 40.6
QL09p011651 Quercus lobata HOM05D000535 ORTHO05D000427 6.4e-06 53.9 67 40.3
Ah.03g135120 Amaranthus hybridus HOM05D000535 ORTHO05D000427 8.4e-06 53.5 53 47.2


User provided reference genes

Program Settings