Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 2855.9 1579 100.0
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 2234.5 1588 79.0
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 2187.5 1579 78.5
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1961.0 1582 69.3
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1956.4 1581 69.3
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1937.9 1579 69.4
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1874.8 1574 68.0
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1862.0 1578 69.4
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1798.5 1597 64.8
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1795.8 1597 65.3
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1758.8 1622 61.5
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1748.4 1594 62.3
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1711.0 1586 63.2
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 0.0e+00 1419.8 2370 42.9
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1331.2 1596 49.7
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1316.6 1645 48.6
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1298.5 1616 48.5
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1294.6 1619 47.9
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1275.4 1624 50.2
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1255.7 1597 48.3
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1227.2 1596 49.1
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1223.4 1605 48.1
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1219.1 1577 51.4
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1209.5 1592 47.6
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1207.2 1582 47.5
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1201.0 1598 50.1
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1187.2 1588 45.0
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1184.1 1618 47.1
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1177.2 1818 45.4
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1154.8 1605 48.8
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1154.4 1602 44.4
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1140.6 1588 48.6
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1131.3 1578 45.1
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1125.2 1632 46.3
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1120.5 1644 46.8
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1108.6 1578 48.1
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1108.6 1578 46.4
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1107.8 1599 43.3
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1105.1 1573 44.9
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1099.7 1593 47.2
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1097.8 1591 45.7
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1093.2 1594 45.7
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1090.9 1590 45.4
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1082.4 1640 42.0
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1075.1 1576 46.8
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.1e-311 1073.5 1590 44.1
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 2.9e-307 1059.3 1641 44.2
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 2.7e-305 1052.7 1582 42.9
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 2.3e-304 1049.7 1598 43.3
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 1.5e-303 1047.0 1593 44.9
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 1.5e-303 1047.0 1579 41.9
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 3.7e-302 1042.3 1652 43.2
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 2.2e-294 1016.5 1591 44.1
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 3.7e-294 1015.8 1601 43.9
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 8.2e-294 1014.6 1601 44.7
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 9.1e-293 1011.1 1599 46.0
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 8.5e-291 1004.6 1589 43.5
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 2.4e-285 986.5 1596 41.5
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 7.0e-285 984.9 1578 44.9
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 9.1e-285 984.6 1610 40.9
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 1.2e-284 984.2 1587 43.7
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 1.6e-284 983.8 1595 41.2
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 1.7e-283 980.3 1599 41.2
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 1.6e-281 973.8 1599 43.2
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 1.8e-280 970.3 1621 40.5
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 2.3e-280 969.9 1619 43.5
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 2.6e-279 966.5 1602 41.0
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 4.8e-278 962.2 1620 40.6
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.6e-276 957.2 1610 39.9
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 1.8e-272 943.7 1586 40.0
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 9.8e-271 937.9 1588 40.1
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 8.3e-270 934.9 1605 42.9
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 2.5e-266 923.3 1610 39.5
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.5e-266 923.3 1054 50.9
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 7.5e-263 911.8 974 51.4
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 7.5e-263 911.8 926 55.6
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 1.1e-261 907.9 1603 39.2
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.1e-261 907.9 1606 39.2
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 7.0e-261 905.2 1672 38.4
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 2.0e-260 903.7 1596 42.2
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 9.8e-255 884.8 990 49.4
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.6e-249 867.5 751 61.5
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 2.8e-249 866.7 1584 41.3
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 8.9e-248 861.7 1573 41.6
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 9.8e-247 858.2 1652 38.0
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 2.2e-246 857.1 1586 41.3
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 5.2e-240 835.9 1385 41.2
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 8.1e-233 812.0 931 49.7
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 4.1e-229 799.7 1587 36.4
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.2e-207 728.4 1634 38.4
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 8.4e-206 722.2 1588 35.7
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 9.0e-200 702.2 773 52.3
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 1.3e-193 681.8 1593 31.8
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 8.2e-193 679.1 1263 42.0
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.3e-190 671.8 1499 34.8
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.2e-180 638.6 1379 34.0
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 7.7e-167 592.8 669 49.0
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 1.7e-158 565.1 543 56.5
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 8.5e-158 562.8 1607 30.7
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 4.5e-151 540.4 1029 39.1
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.6e-143 515.4 879 38.3
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 3.0e-134 484.6 1567 29.6
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.2e-132 479.2 1449 29.9
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 5.6e-117 427.2 426 56.3
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.6e-111 409.1 552 45.1
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 2.5e-101 375.2 1545 25.6
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 3.6e-100 371.3 1587 30.6
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 1.3e-97 362.8 1086 30.6
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 8.4e-97 360.1 475 43.2
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.5e-95 354.8 349 59.0
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.6e-92 345.9 408 49.3
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 5.5e-88 330.9 1545 27.6
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 3.5e-87 328.2 404 53.0
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 5.0e-81 307.8 332 54.2
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.7e-76 291.6 290 50.3
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 2.0e-66 259.2 335 45.4
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 4.4e-61 241.5 230 57.0
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.2e-57 229.2 239 54.8
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-50 206.8 345 38.6
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 6.5e-49 201.1 157 66.9
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 4.4e-45 188.3 239 51.5
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 4.5e-42 178.3 158 60.8
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-41 174.5 739 24.9
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 7.2e-40 171.0 139 64.7
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.8e-36 159.1 584 25.2
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-34 153.7 234 36.8
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 3.5e-34 152.1 158 55.1
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 2.3e-30 139.4 346 28.3
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.4e-29 135.6 471 28.7
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 1.0e-22 114.0 104 59.6
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 3.1e-22 112.5 360 26.4
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 5.8e-21 108.2 102 55.9
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.9e-20 105.9 569 23.4
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 3.5e-18 99.0 183 37.7
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 8.6e-17 94.4 74 60.8
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 4.4e-13 82.0 259 29.0
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 4.9e-12 78.6 67 62.7
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.1e-11 77.4 73 57.5
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 1.0e-09 70.9 70 55.7
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 1.3e-09 70.5 155 30.3
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 3.9e-09 68.9 231 28.6
Psat4g190880 Pisum sativum HOM05D001399 ORTHO05D006361 4.3e-08 65.5 56 64.3
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.2e-07 63.9 68 58.8
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 4.7e-07 62.0 48 62.5


User provided reference genes

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