Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 4.9e-67 257.7 132 100.0
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 1.1e-61 240.0 132 93.2
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 3.2e-58 228.4 133 91.7
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 3.0e-56 221.9 133 86.5
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 2.5e-55 218.8 132 86.4
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 2.5e-55 218.8 132 84.8
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 3.3e-55 218.4 132 83.3
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 1.3e-54 216.5 132 83.3
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 1.6e-54 216.1 132 83.3
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 2.4e-53 212.2 132 85.6
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 3.1e-53 211.8 132 84.8
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 3.1e-53 211.8 132 80.3
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 3.1e-53 211.8 132 81.8
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 6.9e-53 210.7 132 80.3
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.0e-52 209.1 132 81.8
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.0e-52 209.1 132 81.8
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 1.3e-51 206.5 132 76.5
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 3.8e-51 204.9 133 78.2
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 1.1e-50 203.4 132 76.5
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 2.4e-50 202.2 132 80.3
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 5.5e-50 201.1 132 74.2
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 7.1e-50 200.7 134 77.6
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 1.2e-49 199.9 134 75.4
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 1.2e-49 199.9 134 77.6
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 2.7e-49 198.7 131 75.6
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 1.0e-48 196.8 134 76.9
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 1.3e-48 196.4 133 78.2
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 2.3e-48 195.7 132 75.0
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 3.0e-48 195.3 133 75.2
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 6.7e-48 194.1 134 73.9
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 1.5e-47 193.0 133 76.7
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 1.9e-47 192.6 134 71.6
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 2.5e-47 192.2 132 72.0
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 2.5e-47 192.2 132 72.0
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 4.3e-47 191.4 132 74.2
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 4.3e-47 191.4 132 71.2
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 5.6e-47 191.0 133 75.9
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 7.4e-47 190.7 132 72.0
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 9.6e-47 190.3 132 75.0
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 1.3e-46 189.9 134 73.1
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 1.3e-46 189.9 132 73.5
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 1.6e-46 189.5 134 73.9
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 1.6e-46 189.5 134 77.6
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 1.6e-46 189.5 134 76.1
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 2.1e-46 189.1 134 75.4
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 2.1e-46 189.1 127 75.6
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 2.8e-46 188.7 134 76.1
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 3.7e-46 188.3 132 71.2
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 3.7e-46 188.3 132 75.0
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 3.7e-46 188.3 133 73.7
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 8.2e-46 187.2 132 73.5
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 8.2e-46 187.2 133 69.9
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 2.4e-45 185.7 132 72.0
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.1e-45 185.3 136 72.8
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.1e-45 185.3 136 72.8
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 4.0e-45 184.9 136 72.8
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.0e-45 184.9 136 72.8
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.0e-45 184.9 136 72.8
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.0e-45 184.9 136 72.8
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 5.3e-45 184.5 134 71.6
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.0e-45 183.7 136 72.1
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.2e-44 183.3 134 73.9
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.5e-44 183.0 134 73.9
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.5e-44 183.0 133 69.2
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 2.0e-44 182.6 134 70.1
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 2.6e-44 182.2 134 73.1
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 2.6e-44 182.2 133 69.2
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 4.5e-44 181.4 124 76.6
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 4.5e-44 181.4 133 69.2
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 5.8e-44 181.0 132 73.5
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 5.8e-44 181.0 132 72.0
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 7.6e-44 180.6 134 71.6
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.0e-43 180.3 133 68.4
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.0e-43 180.3 134 72.4
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.3e-43 179.9 134 67.2
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 1.3e-43 179.9 132 69.7
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 1.3e-43 179.9 133 69.9
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 1.7e-43 179.5 136 72.8
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.7e-43 179.5 136 72.8
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 2.9e-43 178.7 127 71.7
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.8e-43 178.3 135 70.4
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 8.4e-43 177.2 135 70.4
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 8.4e-43 177.2 129 71.3
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.1e-42 176.8 120 76.7
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 1.9e-42 176.0 134 72.4
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.9e-42 176.0 105 84.8
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 2.5e-42 175.6 133 68.4
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 3.2e-42 175.3 133 68.4
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 7.1e-42 174.1 135 68.1
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.6e-41 172.9 135 71.1
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 2.1e-41 172.6 132 68.2
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 2.1e-41 172.6 126 73.0
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 2.7e-41 172.2 128 69.5
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 3.5e-41 171.8 124 71.8
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 3.5e-41 171.8 136 66.2
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 1.0e-40 170.2 132 65.9
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 1.8e-40 169.5 133 66.9
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 2.3e-40 169.1 133 66.2
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 1.1e-39 166.8 131 64.9
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 1.9e-39 166.0 120 73.3
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 2.5e-39 165.6 121 70.2
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 4.3e-39 164.9 132 67.4
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 5.7e-39 164.5 131 66.4
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 1.3e-38 163.3 124 67.7
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 4.8e-38 161.4 120 70.8
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 4.8e-38 161.4 120 70.8
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 4.8e-38 161.4 120 70.8
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 4.8e-38 161.4 120 70.8
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 1.4e-37 159.8 112 72.3
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 1.8e-37 159.5 102 77.5
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 9.0e-37 157.1 133 60.2
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 2.6e-36 155.6 133 66.2
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 5.9e-36 154.5 132 62.1
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 5.9e-36 154.5 92 79.3
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 3.8e-35 151.8 100 75.0
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 1.9e-34 149.4 92 76.1
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 7.2e-34 147.5 134 61.2
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 1.6e-33 146.4 133 60.9
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 3.6e-33 145.2 98 76.5
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 4.6e-33 144.8 92 72.8
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.3e-32 143.3 123 61.8
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 1.8e-32 142.9 134 56.0
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.3e-32 142.5 112 65.2
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 3.1e-29 132.1 117 59.8
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 1.2e-28 130.2 124 56.5
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 1.3e-27 126.7 120 62.5
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.8e-24 116.3 93 67.7
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.7e-23 111.3 57 91.2
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 4.1e-21 105.1 101 55.4
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 1.0e-19 100.5 92 55.4
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 1.7e-19 99.8 100 52.0
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 5.0e-19 98.2 116 49.1
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 1.1e-18 97.1 81 58.0
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.6e-15 85.9 52 73.1
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 1.6e-12 76.6 103 47.6
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 5.9e-12 74.7 99 43.4
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 7.7e-12 74.3 62 61.3
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 1.9e-10 69.7 142 36.6
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 1.0e-08 63.9 80 55.0


User provided reference genes

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