Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 9.6e-104 380.2 193 100.0
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 3.5e-29 132.5 127 61.4
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 2.4e-22 109.8 193 45.1
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 1.0e-20 104.4 184 44.0
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 8.1e-18 94.7 149 46.3
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 1.4e-17 94.0 179 40.8
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 2.3e-17 93.2 212 37.3
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 8.9e-17 91.3 149 46.3
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 2.6e-16 89.7 200 37.0
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 9.8e-16 87.8 198 37.9
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 2.9e-15 86.3 170 39.4
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 1.9e-14 83.6 151 42.4
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 4.1e-14 82.4 190 39.5
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 5.4e-14 82.0 145 36.6
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 7.1e-14 81.6 188 38.8
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 9.2e-14 81.3 145 36.6
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 2.1e-13 80.1 151 37.7
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 2.7e-13 79.7 154 38.3
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 4.6e-13 79.0 147 42.9
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 4.6e-13 79.0 113 45.1
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 1.0e-12 77.8 103 46.6
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 2.3e-12 76.6 150 43.3
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 3.0e-12 76.3 152 40.1
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 6.6e-12 75.1 159 40.3
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.9e-11 73.6 155 38.7
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 2.5e-11 73.2 118 39.0
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 3.3e-11 72.8 160 36.9
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 3.3e-11 72.8 127 44.1
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 4.3e-11 72.4 193 34.2
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 5.6e-11 72.0 166 38.6
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 9.5e-11 71.2 178 35.4
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.2e-10 70.9 116 37.9
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 1.2e-10 70.9 103 43.7
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.6e-10 70.5 151 35.1
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 1.6e-10 70.5 151 35.1
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 2.1e-10 70.1 119 42.0
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 2.8e-10 69.7 162 33.3
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 2.8e-10 69.7 162 36.4
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 3.6e-10 69.3 182 35.7
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 3.6e-10 69.3 152 36.8
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 3.6e-10 69.3 168 32.1
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 4.7e-10 68.9 146 36.3
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 6.2e-10 68.6 135 37.8
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 6.2e-10 68.6 167 31.7
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 8.1e-10 68.2 146 38.4
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.4e-09 67.4 189 34.9
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.8e-09 67.0 141 36.9
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.8e-09 67.0 157 38.2
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 3.1e-09 66.2 170 37.1
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 3.1e-09 66.2 153 34.0
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 4.0e-09 65.9 136 36.8
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 4.0e-09 65.9 138 39.9
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 5.2e-09 65.5 159 37.1
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 5.2e-09 65.5 154 33.8
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 5.2e-09 65.5 165 31.5
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 1.2e-08 64.3 103 39.8
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.5e-08 63.9 126 38.1
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 1.5e-08 63.9 130 39.2
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 2.0e-08 63.5 160 38.1
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 2.0e-08 63.5 111 38.7
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 2.0e-08 63.5 137 35.8
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 2.6e-08 63.2 115 37.4
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 5.8e-08 62.0 143 38.5
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 5.8e-08 62.0 111 37.8
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 7.6e-08 61.6 166 36.7
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 7.6e-08 61.6 180 33.3
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 7.6e-08 61.6 108 37.0
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 9.9e-08 61.2 165 37.0
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 1.3e-07 60.8 172 33.7
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 2.2e-07 60.1 131 35.9
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.9e-07 59.7 159 32.7
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 3.7e-07 59.3 160 37.5
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 6.4e-07 58.5 114 37.7
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 8.4e-07 58.2 162 34.6
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 8.4e-07 58.2 154 35.7
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.1e-06 57.8 110 34.5
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 1.1e-06 57.8 171 32.2
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 2.4e-06 56.6 162 34.6
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 3.2e-06 56.2 162 34.0
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 3.2e-06 56.2 173 34.7
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 4.1e-06 55.8 162 34.6
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 9.2e-06 54.7 159 32.1


User provided reference genes

Program Settings