Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 4.7e-216 754.2 374 100.0
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 1.1e-175 620.2 359 85.2
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.4e-175 619.8 363 85.1
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 3.6e-155 552.0 366 75.4
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 3.1e-143 512.3 367 68.1
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 2.7e-142 509.2 364 68.7
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 3.5e-142 508.8 358 69.6
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 1.1e-140 503.8 365 68.5
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 4.2e-140 501.9 364 67.3
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 7.2e-140 501.1 364 67.6
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 8.0e-139 497.7 354 68.4
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 2.3e-138 496.1 376 66.2
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 8.8e-138 494.2 369 63.7
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 1.2e-137 493.8 350 68.3
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 1.5e-137 493.4 362 65.7
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 5.7e-137 491.5 352 68.2
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 5.7e-137 491.5 364 65.7
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 9.8e-137 490.7 352 68.2
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 9.8e-137 490.7 364 64.0
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 2.2e-136 489.6 347 66.9
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 4.8e-136 488.4 363 71.6
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 4.1e-135 485.3 354 67.5
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 7.0e-135 484.6 378 64.0
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 9.1e-135 484.2 347 67.1
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.0e-133 480.7 360 68.1
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 1.3e-133 480.3 361 67.0
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 3.3e-132 475.7 348 65.2
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 5.5e-132 474.9 349 65.3
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 5.5e-132 474.9 349 65.3
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 2.8e-131 472.6 370 63.8
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.0e-130 470.7 364 64.3
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.8e-130 469.9 373 62.7
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 3.0e-130 469.2 364 64.0
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 5.2e-130 468.4 340 65.9
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 1.2e-129 467.2 350 64.6
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 2.6e-129 466.1 364 62.6
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 2.6e-129 466.1 365 63.0
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 3.4e-129 465.7 348 65.2
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 4.4e-129 465.3 348 64.1
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 7.5e-129 464.5 350 64.0
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 7.5e-129 464.5 348 62.6
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 1.7e-128 463.4 348 62.9
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 2.2e-128 463.0 342 65.8
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 2.8e-128 462.6 348 64.4
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 3.7e-128 462.2 351 64.7
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 4.9e-128 461.8 350 63.4
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 1.1e-127 460.7 364 61.3
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.8e-127 459.9 350 64.3
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 2.4e-127 459.5 349 63.3
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 3.1e-127 459.1 345 63.8
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 7.0e-127 458.0 342 62.6
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 1.2e-126 457.2 344 62.2
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 3.5e-126 455.7 345 62.9
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 3.5e-126 455.7 368 61.4
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 4.5e-126 455.3 354 62.7
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 5.9e-126 454.9 354 62.7
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 3.8e-125 452.2 348 62.1
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 5.0e-125 451.8 360 63.3
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 5.0e-125 451.8 362 61.9
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 8.6e-125 451.1 348 62.4
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 1.5e-124 450.3 349 61.3
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 1.4e-122 443.7 350 62.0
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 3.0e-122 442.6 349 60.2
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 6.8e-122 441.4 352 58.8
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 1.2e-121 440.7 349 60.2
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.5e-121 440.3 349 61.6
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 4.4e-121 438.7 349 59.3
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 3.7e-120 435.6 354 62.4
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 3.2e-119 432.6 369 59.9
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 2.7e-118 429.5 351 59.5
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 7.8e-118 427.9 349 61.6
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 3.6e-115 419.1 351 59.3
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 3.6e-115 419.1 351 59.3
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.3e-114 416.4 351 57.8
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 4.0e-114 415.6 364 58.2
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 5.2e-114 415.2 367 58.9
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 6.8e-114 414.8 348 58.6
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 6.8e-114 414.8 348 58.0
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 8.9e-114 414.5 345 58.6
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 2.6e-113 412.9 351 58.4
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 2.6e-113 412.9 351 58.4
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 3.4e-113 412.5 372 54.0
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 9.2e-111 404.4 366 55.7
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 9.2e-111 404.4 352 56.0
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 4.6e-110 402.1 366 56.3
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 7.8e-110 401.4 373 54.4
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 3.9e-109 399.1 367 55.3
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 3.9e-109 399.1 302 64.2
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 1.4e-106 390.6 306 60.5
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 6.8e-106 388.3 371 50.1
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 2.2e-104 383.3 349 55.0
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 4.1e-103 379.0 290 64.1
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 3.3e-100 369.4 351 54.4
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 3.8e-96 355.9 344 50.9
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 6.4e-96 355.1 345 49.6
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 2.1e-94 350.1 369 46.9
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 6.6e-93 345.1 355 52.7
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 6.6e-93 345.1 355 52.7
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 2.2e-88 330.1 344 46.5
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 1.2e-86 324.3 242 62.0
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 3.9e-85 319.3 293 48.5
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 1.6e-83 313.9 227 69.6
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 1.3e-80 304.3 209 68.9
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 5.4e-79 298.9 227 66.1
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.6e-78 297.4 364 45.6
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 6.7e-77 292.0 344 42.7
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 1.0e-69 268.1 327 44.0
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 3.1e-66 256.5 253 54.5
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 5.8e-65 252.3 260 50.4
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 2.1e-62 243.8 185 65.9
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.1e-60 238.0 169 66.9
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 7.7e-57 225.3 354 40.1
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 4.8e-51 206.1 177 55.9
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 3.1e-42 176.8 117 68.4
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 1.0e-37 161.8 144 54.9
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 7.4e-36 155.6 110 66.4
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.7e-35 153.3 146 52.7
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 7.0e-34 149.1 145 53.1
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 1.4e-26 124.8 105 56.2
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 2.6e-20 104.0 79 63.3
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.3e-19 101.7 85 60.0
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 3.7e-19 100.1 63 73.0
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 8.6e-16 89.0 73 54.8
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 2.8e-14 84.0 72 55.6
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 2.7e-09 67.4 87 47.1
Medtr8g106110 Medicago truncatula HOM05D002030 ORTHO05D007413 2.7e-09 67.4 45 68.9
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 4.3e-07 60.1 43 60.5
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 2.1e-06 57.8 122 30.3


User provided reference genes

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