Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 5.9e-208 727.2 357 100.0
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 1.4e-156 556.6 319 87.1
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 4.0e-156 555.1 320 86.6
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.8e-148 529.6 325 79.7
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 2.4e-148 529.3 334 79.9
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 1.2e-144 516.9 322 80.4
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 4.3e-142 508.4 324 79.3
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 3.7e-133 478.8 335 73.1
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 6.1e-128 461.5 327 70.3
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 2.4e-124 449.5 315 70.2
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 4.5e-123 445.3 319 69.9
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 1.1e-121 440.7 327 67.6
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 7.2e-121 438.0 316 69.9
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 9.4e-121 437.6 340 66.5
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.6e-120 436.8 330 67.6
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 6.1e-120 434.9 337 65.0
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 6.7e-119 431.4 312 67.3
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 8.8e-119 431.0 319 67.7
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 9.7e-118 427.6 310 65.5
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 1.7e-117 426.8 311 65.6
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 2.8e-117 426.0 346 62.7
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 2.8e-117 426.0 312 67.0
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 1.4e-116 423.7 335 63.3
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 2.6e-115 419.5 398 58.3
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 1.7e-114 416.8 312 64.7
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 1.9e-113 413.3 308 66.9
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 1.2e-112 410.6 344 61.0
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 4.7e-112 408.7 325 64.6
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 7.9e-112 407.9 322 62.4
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 3.0e-111 406.0 358 57.0
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 3.3e-110 402.5 331 61.3
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 3.7e-109 399.1 314 61.8
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 6.3e-109 398.3 331 62.2
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 1.1e-108 397.5 309 63.8
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 7.0e-108 394.8 312 61.5
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 5.9e-107 391.7 361 60.9
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 7.7e-107 391.3 331 59.8
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.1e-105 387.5 286 65.7
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.9e-105 386.7 374 55.1
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 9.4e-105 384.4 221 87.3
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.6e-104 383.6 264 70.1
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 3.6e-104 382.5 372 54.6
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 8.0e-104 381.3 368 55.7
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 1.0e-103 380.9 373 55.0
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 1.0e-103 380.9 373 55.0
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 2.3e-103 379.8 309 60.2
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 4.0e-103 379.0 309 60.5
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 8.8e-103 377.9 275 68.0
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 8.8e-103 377.9 315 61.6
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 1.2e-102 377.5 317 60.3
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 1.2e-102 377.5 317 60.3
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 3.3e-102 375.9 236 79.7
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 9.7e-102 374.4 316 57.9
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 4.8e-101 372.1 311 60.5
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 4.8e-101 372.1 312 60.6
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 9.1e-100 367.9 325 59.1
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.2e-99 367.5 351 55.6
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 4.5e-99 365.5 315 59.0
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 4.5e-99 365.5 320 58.8
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 2.2e-98 363.2 312 59.6
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 3.2e-97 359.4 313 59.4
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 3.2e-97 359.4 319 58.3
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 9.4e-97 357.8 317 57.4
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 9.4e-97 357.8 320 56.6
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 9.4e-97 357.8 279 61.6
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 4.7e-96 355.5 314 57.3
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 6.1e-96 355.1 298 59.1
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.0e-95 354.4 293 59.4
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.8e-95 353.6 317 57.7
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 4.0e-95 352.4 326 57.1
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 1.5e-94 350.5 325 56.0
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 1.5e-94 350.5 276 62.7
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 4.4e-94 349.0 320 54.1
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.7e-93 347.1 298 59.4
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 4.8e-93 345.5 323 58.5
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 1.8e-92 343.6 325 55.1
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 2.4e-92 343.2 375 49.1
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.0e-90 337.8 308 56.8
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 4.2e-89 332.4 278 60.8
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 1.2e-88 330.9 311 54.7
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 1.0e-87 327.8 314 54.1
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.6e-86 323.2 285 55.4
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 3.1e-84 316.2 272 55.5
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 5.4e-84 315.5 239 64.4
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 2.0e-83 313.5 228 71.1
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 4.5e-83 312.4 334 50.3
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 5.9e-83 312.0 309 52.4
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 5.9e-83 312.0 309 52.4
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 5.6e-81 305.4 230 65.7
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 9.5e-81 304.7 331 48.6
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 6.1e-80 302.0 338 50.3
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 1.8e-79 300.4 188 72.9
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 3.4e-78 296.2 190 71.6
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 2.9e-77 293.1 238 62.2
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 4.9e-77 292.4 318 51.6
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 1.8e-76 290.4 318 49.7
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 7.0e-76 288.5 270 55.2
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 3.0e-74 283.1 226 63.3
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 6.6e-74 282.0 229 62.0
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 7.3e-73 278.5 311 49.2
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.2e-72 277.7 305 46.2
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 4.7e-72 275.8 231 59.7
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 8.0e-72 275.0 212 63.7
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 1.4e-71 274.2 309 47.6
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 3.1e-71 273.1 222 66.7
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.0e-66 256.5 321 42.7
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.4e-63 247.7 312 47.4
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 5.2e-63 245.7 319 45.5
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.4e-62 243.0 316 43.0
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 2.4e-60 236.9 184 66.3
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 3.2e-60 236.5 151 72.2
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 2.3e-58 230.3 185 58.9
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 7.3e-57 225.3 261 47.5
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 3.5e-51 206.5 288 40.6
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 1.5e-49 201.1 180 58.3
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 3.3e-49 199.9 128 70.3
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.6e-48 197.6 160 60.0
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 4.8e-40 169.5 140 63.6
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 4.8e-40 169.5 132 59.8
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 8.1e-40 168.7 167 52.7
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 6.9e-39 165.6 100 74.0
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 2.0e-30 137.5 85 74.1
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 2.6e-30 137.1 87 72.4
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 8.4e-29 132.1 78 74.4
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 8.7e-26 122.1 178 39.9
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.9e-20 104.4 101 56.4
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 2.8e-16 90.5 79 54.4
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 4.1e-15 86.7 104 47.1
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.0e-13 82.0 92 47.8
Medtr4g015670 Medicago truncatula HOM05D006152 ORTHO05D008137 1.6e-11 74.7 71 60.6
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 4.6e-11 73.2 65 55.4
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 5.1e-10 69.7 67 47.8
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 1.5e-09 68.2 42 73.8
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 1.9e-09 67.8 42 71.4
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.9e-09 67.8 42 71.4
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.9e-09 67.8 42 71.4


User provided reference genes

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