Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37029 Trifolium pratense HOM05D002950 ORTHO05D006701 7.1e-52 206.8 94 100.0
TPR.G37104 Trifolium pratense HOM05D002950 ORTHO05D006701 3.8e-37 157.9 85 83.5
Psat4g005680 Pisum sativum HOM05D002950 ORTHO05D006701 1.9e-36 155.6 84 83.3
Glyma.07G262800 Glycine max HOM05D002950 ORTHO05D006701 1.0e-34 149.8 83 78.3
Lalb_Chr15g0087701 Lupinus albus HOM05D002950 ORTHO05D006701 3.0e-34 148.3 82 78.0
Ca_21068_v3 Cicer arietinum L. HOM05D002950 ORTHO05D006701 5.1e-34 147.5 83 79.5
Medtr4g132450 Medicago truncatula HOM05D002950 ORTHO05D006701 8.7e-34 146.7 84 78.6
Phvul.003G080900 Phaseolus vulgaris HOM05D002950 ORTHO05D006701 8.7e-34 146.7 82 76.8
Lj6g0020889 Lotus japonicus HOM05D002950 ORTHO05D006701 1.1e-33 146.4 82 76.8
Glyma.15G110400 Glycine max HOM05D002950 ORTHO05D006701 1.5e-33 146.0 82 75.6
Lalb_Chr20g0118861 Lupinus albus HOM05D002950 ORTHO05D006701 1.9e-33 145.6 82 76.8
VMungo1215G3037 Vigna mungo HOM05D002950 ORTHO05D006701 3.3e-33 144.8 82 75.6
arahy.Tifrunner.gnm1.ann1.C5RAU0 Arachis hypogaea HOM05D002950 ORTHO05D006701 4.3e-33 144.4 82 75.6
arahy.Tifrunner.gnm1.ann1.QTWL09 Arachis hypogaea HOM05D002950 ORTHO05D006701 4.3e-33 144.4 82 75.6
Phvul.006G147700 Phaseolus vulgaris HOM05D002950 ORTHO05D006701 4.3e-33 144.4 82 75.6
TPR.G13032 Trifolium pratense HOM05D002950 ORTHO05D006701 4.3e-33 144.4 82 75.6
Glyma.17G011300 Glycine max HOM05D002950 ORTHO05D006701 5.6e-33 144.1 82 76.8
Medtr2g023970 Medicago truncatula HOM05D002950 ORTHO05D006701 1.3e-32 142.9 82 74.4
Psat1g178880 Pisum sativum HOM05D002950 ORTHO05D006701 2.1e-32 142.1 82 74.4
CiPaw.09G095500 Carya illinoinensis HOM05D002950 ORTHO05D006701 1.2e-30 136.3 82 69.5
vmacro03674 Vaccinium macrocarpon HOM05D002950 ORTHO05D006701 1.2e-30 136.3 82 70.7
Actinidia26894 Actinidia chinensis HOM05D002950 ORTHO05D006701 1.5e-30 136.0 82 72.0
CSS0003009 Camellia sinensis var. sinensis HOM05D002950 ORTHO05D006701 2.0e-30 135.6 82 72.0
CANSAT56G1058 Cannabis sativa HOM05D002950 ORTHO05D006701 2.0e-30 135.6 83 67.5
Nn1g07219 Nelumbo nucifera HOM05D002950 ORTHO05D006701 2.6e-30 135.2 83 68.7
Dinv13926 Davidia involucrata HOM05D002950 ORTHO05D006701 3.4e-30 134.8 82 70.7
FAN21G2270 Fragaria x ananassa HOM05D002950 ORTHO05D006701 4.5e-30 134.4 83 68.7
Cpa.g.sc152.37 Carica papaya HOM05D002950 ORTHO05D006701 5.8e-30 134.0 83 66.3
FvH4_3g01690 Fragaria vesca HOM05D002950 ORTHO05D006701 5.8e-30 134.0 83 68.7
Rhsim13G0151800 Rhododendron simsii HOM05D002950 ORTHO05D006701 5.8e-30 134.0 82 69.5
RcHm_v2.0_Chr5g0002541 Rosa chinensis HOM05D002950 ORTHO05D006701 5.8e-30 134.0 83 68.7
TAR627G0195 Trochodendron aralioides HOM05D002950 ORTHO05D006701 5.8e-30 134.0 88 64.8
PSO210G6869 Papaver somniferum HOM05D002950 ORTHO05D006701 7.6e-30 133.7 82 68.3
MELO3C002430.2 Cucumis melo HOM05D002950 ORTHO05D006701 1.3e-29 132.9 85 68.2
Nn1g03455 Nelumbo nucifera HOM05D002950 ORTHO05D006701 1.3e-29 132.9 88 68.2
VMungo0540G1806 Vigna mungo HOM05D002950 ORTHO05D006701 1.3e-29 132.9 82 72.0
Ca_00681_v3 Cicer arietinum L. HOM05D002950 ORTHO05D006701 2.2e-29 132.1 82 68.3
PSO832G0216 Papaver somniferum HOM05D002950 ORTHO05D006701 2.2e-29 132.1 82 67.1
DCAR_004234 Daucus carota HOM05D002950 ORTHO05D006701 2.9e-29 131.7 82 69.5
FAN25G0098 Fragaria x ananassa HOM05D002950 ORTHO05D006701 2.9e-29 131.7 83 67.5
Gohir.D06G215200 Gossypium hirsutum HOM05D002950 ORTHO05D006701 2.9e-29 131.7 86 67.4
Gorai.010G251200 Gossypium raimondii HOM05D002950 ORTHO05D006701 2.9e-29 131.7 86 67.4
ClCG03G004520 Citrullus lanatus HOM05D002950 ORTHO05D006701 3.8e-29 131.3 83 69.9
Ciclev10015825m.g Citrus clementina HOM05D002950 ORTHO05D006701 4.9e-29 131.0 82 67.1
Gohir.A06G206400 Gossypium hirsutum HOM05D002950 ORTHO05D006701 4.9e-29 131.0 86 66.3
Nitab4.5_0005781g0010 Nicotiana tabacum HOM05D002950 ORTHO05D006701 4.9e-29 131.0 83 66.3
Actinidia02349 Actinidia chinensis HOM05D002950 ORTHO05D006701 6.4e-29 130.6 86 64.0
Sed0007514 Sechium edule HOM05D002950 ORTHO05D006701 8.4e-29 130.2 83 68.7
TWI38G0503 Tripterygium wilfordii HOM05D002950 ORTHO05D006701 8.4e-29 130.2 82 67.1
Cfa000185 Carpinus fangiana HOM05D002950 ORTHO05D006701 1.1e-28 129.8 82 67.1
Duzib160G0808 Durio zibethinus HOM05D002950 ORTHO05D006701 1.1e-28 129.8 87 64.4
Prupe.4G017500 Prunus persica HOM05D002950 ORTHO05D006701 1.1e-28 129.8 82 68.3
CAN.G1014.25 Capsicum annuum HOM05D002950 ORTHO05D006701 1.4e-28 129.4 83 65.1
MD00G1202600 Malus domestica HOM05D002950 ORTHO05D006701 1.4e-28 129.4 82 67.1
CsaV3_1G010400 Cucumis sativus L. HOM05D002950 ORTHO05D006701 2.5e-28 128.6 83 67.5
Solyc02g080900.3 Solanum lycopersicum HOM05D002950 ORTHO05D006701 2.5e-28 128.6 83 65.1
Sopen02g025590 Solanum pennellii HOM05D002950 ORTHO05D006701 2.5e-28 128.6 83 65.1
Peaxi162Scf00178g01014 Petunia axillaris HOM05D002950 ORTHO05D006701 3.2e-28 128.3 82 65.9
GSVIVG01012680001 Vitis vinifera HOM05D002950 ORTHO05D006701 4.2e-28 127.9 85 61.2
Haze_06832 Corylus avellana HOM05D002950 ORTHO05D006701 5.5e-28 127.5 82 65.9
Haze_06837 Corylus avellana HOM05D002950 ORTHO05D006701 5.5e-28 127.5 82 65.9
HanXRQChr16g0516971 Helianthus annuus HOM05D002950 ORTHO05D006701 5.5e-28 127.5 87 64.4
Hund23446 Selenicereus undatus HOM05D002950 ORTHO05D006701 5.5e-28 127.5 86 58.1
PGSC0003DMG400016467 Solanum tuberosum HOM05D002950 ORTHO05D006701 5.5e-28 127.5 83 65.1
TWI63G0535 Tripterygium wilfordii HOM05D002950 ORTHO05D006701 5.5e-28 127.5 82 65.9
Gohir.D06G156200 Gossypium hirsutum HOM05D002950 ORTHO05D006701 7.1e-28 127.1 90 65.6
Gorai.010G182600 Gossypium raimondii HOM05D002950 ORTHO05D006701 7.1e-28 127.1 90 65.6
COL.COLO4_31808 Corchorus olitorius HOM05D002950 ORTHO05D006701 9.3e-28 126.7 84 66.7
Aqoxy1G03068 Aquilegia oxysepala HOM05D002950 ORTHO05D006701 1.2e-27 126.3 82 63.4
ECA234G0282 Erigeron canadensis HOM05D002950 ORTHO05D006701 1.6e-27 125.9 88 61.4
Duzib192G0016 Durio zibethinus HOM05D002950 ORTHO05D006701 2.7e-27 125.2 84 66.7
MBI07_g09093_MAGBIO Magnolia biondii HOM05D002950 ORTHO05D006701 2.7e-27 125.2 84 60.7
MD05G1349900 Malus domestica HOM05D002950 ORTHO05D006701 2.7e-27 125.2 82 65.9
Manes.16G004000 Manihot esculenta HOM05D002950 ORTHO05D006701 2.7e-27 125.2 82 65.9
Thecc.06G225000 Theobroma cacao HOM05D002950 ORTHO05D006701 2.7e-27 125.2 84 66.7
Gohir.A06G150000 Gossypium hirsutum HOM05D002950 ORTHO05D006701 3.5e-27 124.8 84 66.7
Lsat_1_v5_gn_4_59300 Lactuca sativa HOM05D002950 ORTHO05D006701 3.5e-27 124.8 87 63.2
Nitab4.5_0000005g0180 Nicotiana tabacum HOM05D002950 ORTHO05D006701 3.5e-27 124.8 84 60.7
Cc00_g24740 Coffea canephora HOM05D002950 ORTHO05D006701 7.9e-27 123.6 82 61.0
Cc09_g01420 Coffea canephora HOM05D002950 ORTHO05D006701 7.9e-27 123.6 82 61.0
BolC5t29872H Brassica oleracea HOM05D002950 ORTHO05D006701 1.0e-26 123.2 85 62.4
EL10Ac8g20102 Beta vulgaris HOM05D002950 ORTHO05D006701 1.3e-26 122.9 85 60.0
Gohir.A10G011900 Gossypium hirsutum HOM05D002950 ORTHO05D006701 1.3e-26 122.9 89 59.6
BraA06t24142Z Brassica rapa HOM05D002950 ORTHO05D006701 1.8e-26 122.5 84 63.1
Lj1A1233T64 Lonicera japonica HOM05D002950 ORTHO05D006701 1.8e-26 122.5 83 65.1
A06p09520 Brassica napus HOM05D002950 ORTHO05D006701 2.3e-26 122.1 84 63.1
Dinv20085 Davidia involucrata HOM05D002950 ORTHO05D006701 3.9e-26 121.3 73 68.5
Gohir.D10G011300 Gossypium hirsutum HOM05D002950 ORTHO05D006701 3.9e-26 121.3 89 59.6
MSTRG.12897 Avicennia marina HOM05D002950 ORTHO05D006701 5.1e-26 120.9 83 60.2
C05p11240 Brassica napus HOM05D002950 ORTHO05D006701 5.1e-26 120.9 84 61.9
Gorai.011G012600 Gossypium raimondii HOM05D002950 ORTHO05D006701 5.1e-26 120.9 89 59.6
THA.LOC104809485 Tarenaya hassleriana HOM05D002950 ORTHO05D006701 6.7e-26 120.6 83 62.7
Manes.17G028900 Manihot esculenta HOM05D002950 ORTHO05D006701 8.7e-26 120.2 82 62.2
Migut.H01951 Erythranthe guttata HOM05D002950 ORTHO05D006701 1.1e-25 119.8 82 59.8
PGR142G0305 Punica granatum HOM05D002950 ORTHO05D006701 1.9e-25 119.0 82 63.4
Hma1.2p1_0298F.1_g117630 Hydrangea macrophylla HOM05D002950 ORTHO05D006701 2.5e-25 118.6 84 65.5
Potri.004G007400 Populus trichocarpa HOM05D002950 ORTHO05D006701 2.5e-25 118.6 84 63.1
Potri.011G007900 Populus trichocarpa HOM05D002950 ORTHO05D006701 2.5e-25 118.6 84 61.9
Sabra04G0004200 Salix brachista HOM05D002950 ORTHO05D006701 5.6e-25 117.5 84 61.9
AUR62021916 Chenopodium quinoa HOM05D002950 ORTHO05D006701 7.4e-25 117.1 85 56.5
Psat6g002320 Pisum sativum HOM05D002950 ORTHO05D006701 7.4e-25 117.1 76 65.8
Ah.14g087900 Amaranthus hybridus HOM05D002950 ORTHO05D006701 1.3e-24 116.3 86 57.0
Eucgr.E04010 Eucalyptus grandis HOM05D002950 ORTHO05D006701 1.6e-24 115.9 82 62.2
SalBow7G4389 Salvia bowleyana HOM05D002950 ORTHO05D006701 1.6e-24 115.9 82 59.8
Sabra11G0006700 Salix brachista HOM05D002950 ORTHO05D006701 2.1e-24 115.5 84 60.7
Sc17g0007510 Simmondsia chinensis HOM05D002950 ORTHO05D006701 2.1e-24 115.5 84 56.0
Sabra11G0009300 Salix brachista HOM05D002950 ORTHO05D006701 2.8e-24 115.2 84 60.7
Nitab4.5_0001409g0060 Nicotiana tabacum HOM05D002950 ORTHO05D006701 4.8e-24 114.4 72 68.1
Sed0013175 Sechium edule HOM05D002950 ORTHO05D006701 6.2e-24 114.0 88 59.1
CARHR012250 Cardamine hirsuta HOM05D002950 ORTHO05D006701 2.4e-23 112.1 83 57.8
ATR0585G093 Amborella trichopoda HOM05D002950 ORTHO05D006701 3.1e-23 111.7 85 55.3
AT1G11915 Arabidopsis thaliana HOM05D002950 ORTHO05D006701 4.0e-23 111.3 89 52.8
Carub.0001s1160 Capsella rubella HOM05D002950 ORTHO05D006701 5.3e-23 110.9 89 53.9
Sp1g10580 Schrenkiella parvula HOM05D002950 ORTHO05D006701 5.3e-23 110.9 83 57.8
AL1G23110 Arabidopsis lyrata HOM05D002950 ORTHO05D006701 6.9e-23 110.5 89 52.8
Thhalv10008171m.g Eutrema salsugineum HOM05D002950 ORTHO05D006701 3.4e-22 108.2 83 56.6
MELO3C007410.2 Cucumis melo HOM05D002950 ORTHO05D006701 5.8e-22 107.5 89 56.2
CsaV3_6G048820 Cucumis sativus L. HOM05D002950 ORTHO05D006701 2.2e-21 105.5 84 58.3
ClCG01G021760 Citrullus lanatus HOM05D002950 ORTHO05D006701 2.9e-21 105.1 84 58.3
Oeu061580.1 Olea europaea HOM05D002950 ORTHO05D006701 2.9e-21 105.1 74 58.1
Os06g0364500 Oryza sativa ssp. japonica HOM05D002950 ORTHO05D006701 2.9e-21 105.1 85 57.6
Zm00001eb169960 Zea mays HOM05D002950 ORTHO05D006701 1.1e-20 103.2 86 57.0
BcaB02g06442 Brassica carinata HOM05D002950 ORTHO05D006701 1.4e-20 102.8 83 54.2
SGA_v2.0_scaffold130G34353 Striga asiatica HOM05D002950 ORTHO05D006701 1.9e-20 102.4 64 62.5
BcaB02g06445 Brassica carinata HOM05D002950 ORTHO05D006701 1.3e-18 96.3 64 60.9
unitig_26.g9523 Utricularia gibba HOM05D002950 ORTHO05D006701 1.1e-17 93.2 82 52.4
HPP92_023145 Vanilla planifolia HOM05D002950 ORTHO05D006701 1.5e-17 92.8 83 51.8
arahy.Tifrunner.gnm1.ann1.GJ2S1F Arachis hypogaea HOM05D002950 ORTHO05D006701 2.2e-16 89.0 48 75.0
AUR62012740 Chenopodium quinoa HOM05D002950 ORTHO05D006701 9.0e-15 83.6 59 57.6
Peaxi162Scf00294g01312 Petunia axillaris HOM05D002950 ORTHO05D006701 1.0e-13 80.1 85 44.7
CDE07G1520 Ceratophyllum demersum HOM05D002950 ORTHO05D006701 4.6e-11 71.2 43 67.4
Glyma.09G005800 Glycine max HOM05D002950 ORTHO05D006701 1.0e-10 70.1 36 80.6
Atru.chr10.2263 Acer truncatum HOM05D002950 ORTHO05D006701 3.0e-10 68.6 41 65.9
C08p15070 Brassica napus HOM05D002950 ORTHO05D006701 4.8e-08 61.2 53 50.9
BolC8t49137H Brassica oleracea HOM05D002950 ORTHO05D006701 4.8e-08 61.2 53 50.9


User provided reference genes

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