Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 5.9e-228 793.9 409 100.0
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.5e-202 709.5 410 89.8
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 1.2e-201 706.4 409 90.5
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 1.7e-198 696.0 409 88.0
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 5.4e-197 691.0 400 90.5
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.5e-191 672.9 385 90.1
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 7.3e-186 654.1 409 82.2
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 3.4e-183 645.2 409 81.2
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.9e-181 639.4 409 80.7
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 9.2e-181 637.1 406 81.5
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 1.7e-179 632.9 407 80.8
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 3.0e-179 632.1 407 81.6
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.9e-178 629.4 407 80.8
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 3.6e-177 625.2 407 77.9
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 8.1e-177 624.0 407 77.9
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 9.3e-165 583.9 413 73.1
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 5.1e-163 578.2 414 72.9
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 8.7e-163 577.4 413 73.4
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 1.6e-161 573.2 413 70.5
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.6e-159 564.3 413 68.8
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.3e-158 563.5 413 68.5
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 4.9e-158 561.6 412 70.6
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 4.9e-158 561.6 413 69.2
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.9e-158 561.6 413 69.2
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.9e-158 561.6 413 68.5
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.4e-157 560.1 411 70.3
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 1.0e-155 553.9 416 68.8
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 8.7e-155 550.8 414 68.1
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 1.1e-154 550.4 412 69.2
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 1.1e-154 550.4 418 67.9
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 5.6e-154 548.1 413 68.0
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 9.0e-152 540.8 413 66.6
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 5.8e-151 538.1 412 66.5
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 5.8e-151 538.1 411 66.4
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 2.9e-150 535.8 413 65.6
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 6.4e-150 534.6 479 59.7
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 1.6e-148 530.0 410 64.9
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 2.7e-148 529.3 439 61.5
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 6.0e-148 528.1 411 68.4
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.0e-147 527.3 410 65.1
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 1.0e-147 527.3 415 65.5
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 1.3e-147 526.9 411 66.4
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 5.1e-147 525.0 410 65.1
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.5e-146 523.5 387 68.0
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.9e-146 523.1 384 69.5
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 4.3e-146 521.9 411 65.9
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 1.3e-145 520.4 410 64.6
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 1.3e-145 520.4 412 63.8
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 2.8e-145 519.2 414 63.8
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 2.8e-145 519.2 418 63.6
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 7.6e-143 511.1 348 77.6
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 1.0e-142 510.8 385 66.8
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.3e-142 510.4 401 63.8
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.2e-142 509.6 408 64.0
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.9e-142 509.2 410 62.0
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 4.6e-140 501.9 386 66.3
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 4.6e-140 501.9 410 62.9
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 6.1e-140 501.5 413 63.7
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.0e-139 500.7 405 64.7
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.0e-139 500.7 412 62.4
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.3e-139 500.4 410 61.5
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 8.7e-139 497.7 403 63.5
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 8.7e-139 497.7 411 63.5
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 1.3e-137 493.8 412 63.1
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 2.2e-137 493.0 415 61.2
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 2.8e-137 492.7 411 62.3
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 3.4e-135 485.7 410 61.7
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 8.5e-134 481.1 396 61.6
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 8.5e-134 481.1 411 60.8
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 2.5e-133 479.6 419 63.0
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 7.2e-133 478.0 420 58.3
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 2.5e-130 469.5 416 58.7
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 2.8e-129 466.1 415 60.0
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 4.8e-129 465.3 419 56.8
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 2.0e-127 459.9 344 68.6
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 7.7e-127 458.0 354 66.1
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 8.5e-126 454.5 363 64.5
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 3.2e-125 452.6 390 58.2
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 7.2e-125 451.4 351 66.4
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 9.4e-125 451.1 385 59.7
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 1.4e-123 447.2 421 56.3
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 6.7e-123 444.9 411 56.2
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 1.1e-122 444.1 418 58.1
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 6.3e-121 438.3 347 64.0
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 1.4e-120 437.2 352 62.8
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 7.0e-120 434.9 402 55.2
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 9.1e-120 434.5 415 56.6
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 1.2e-119 434.1 411 55.7
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 2.6e-119 433.0 370 61.4
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 1.0e-118 431.0 359 59.6
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 1.2e-116 424.1 415 55.4
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 2.1e-116 423.3 414 55.6
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 4.7e-116 422.2 414 55.3
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 4.7e-116 422.2 414 55.6
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 6.1e-116 421.8 415 55.2
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 8.2e-113 411.4 385 57.1
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 1.8e-112 410.2 393 55.2
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 1.2e-111 407.5 353 58.6
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 2.0e-111 406.8 416 54.3
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 2.2e-110 403.3 416 54.1
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 2.2e-110 403.3 414 53.9
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.1e-109 401.0 299 68.6
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.9e-109 400.2 451 47.2
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 2.5e-109 399.8 464 46.8
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.6e-108 397.1 427 49.4
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 7.0e-88 328.6 265 61.9
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.3e-86 324.3 373 44.8
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 2.3e-86 323.6 469 38.6
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 1.6e-84 317.4 445 39.3
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 1.7e-81 307.4 221 67.0
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 2.7e-79 300.1 354 51.7
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.3e-77 293.1 193 74.1
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 4.7e-76 289.3 313 48.6
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 8.0e-76 288.5 233 69.1
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 9.8e-74 281.6 194 71.6
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 5.8e-66 255.8 275 52.7
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 2.2e-65 253.8 193 63.7
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 1.6e-60 237.7 310 42.3
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.6e-55 221.1 159 71.1
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 2.3e-46 190.7 132 72.7
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 8.7e-46 188.7 407 33.2
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 9.0e-43 178.7 136 69.9
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 3.0e-38 163.7 146 60.3
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.3e-37 160.2 153 56.2
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 2.1e-36 157.5 319 32.0
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.8e-36 157.1 110 70.0
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 9.0e-35 152.1 302 37.1
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.0e-33 148.7 315 31.1
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 4.2e-32 143.3 166 50.0
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.1e-29 135.2 94 66.0
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 1.8e-27 127.9 590 24.4
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 7.4e-21 105.9 81 64.2
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 8.5e-17 92.4 119 43.7
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 3.3e-13 80.5 52 73.1
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 9.1e-11 72.4 95 45.3
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 2.0e-10 71.2 81 44.4
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 3.2e-08 63.9 114 36.0
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 4.7e-07 60.1 337 22.3
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 3.0e-06 57.4 31 80.6
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 3.0e-06 57.4 158 27.8


User provided reference genes

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