Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 5.8e-170 600.9 326 100.0
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 5.2e-110 401.7 346 67.9
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.9e-108 396.0 343 65.9
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 1.2e-106 390.6 340 65.9
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 3.9e-105 385.6 346 65.6
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 9.9e-93 344.4 343 60.1
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 9.2e-91 337.8 346 58.4
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.3e-89 333.2 312 63.5
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 5.6e-88 328.6 345 57.4
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 8.1e-87 324.7 343 58.0
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 2.0e-85 320.1 344 56.7
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 8.1e-79 298.1 337 52.2
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 2.5e-72 276.6 337 51.6
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 6.2e-71 271.9 345 49.6
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 1.2e-69 267.7 337 48.4
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 1.9e-67 260.4 332 47.6
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.7e-66 256.5 206 65.0
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 8.7e-65 251.5 205 63.9
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 9.6e-64 248.1 312 49.0
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.3e-63 247.7 205 64.9
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.1e-62 244.6 337 46.6
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 2.4e-62 243.4 206 60.7
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.1e-62 243.0 337 45.4
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.1e-62 243.0 322 46.3
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 4.0e-62 242.7 205 62.9
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 6.9e-62 241.9 208 61.5
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.5e-61 240.7 205 60.5
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.6e-61 240.0 206 60.2
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.6e-61 240.0 206 59.7
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 9.9e-61 238.0 324 46.9
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.3e-60 237.7 318 44.7
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 8.4e-60 235.0 209 62.2
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.1e-59 234.6 208 61.1
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 3.2e-59 233.0 306 45.8
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 1.6e-58 230.7 326 46.3
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.6e-58 230.7 320 45.9
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 6.0e-58 228.8 328 43.3
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.8e-57 227.3 335 46.3
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.3e-57 226.9 328 43.3
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 5.1e-57 225.7 336 43.8
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 6.7e-57 225.3 326 44.8
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 1.9e-56 223.8 322 43.5
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.9e-56 223.8 328 45.4
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.9e-56 223.8 236 54.7
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 2.5e-56 223.4 324 46.6
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 4.3e-56 222.6 221 56.1
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.3e-55 221.1 331 42.9
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.6e-55 220.7 322 43.2
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.1e-55 220.3 329 43.2
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 3.7e-55 219.5 340 43.2
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.8e-54 217.2 328 42.7
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 3.1e-54 216.5 207 58.0
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 6.9e-54 215.3 327 42.8
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.6e-53 213.4 234 50.0
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 5.8e-53 212.2 328 40.2
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 7.6e-53 211.8 319 42.6
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.3e-52 211.1 326 40.2
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.7e-52 210.7 343 41.4
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 3.8e-52 209.5 207 54.6
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 8.4e-52 208.4 282 46.5
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 8.4e-52 208.4 339 40.7
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.1e-51 208.0 329 39.8
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.1e-51 208.0 207 55.1
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.4e-51 207.6 298 45.3
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.4e-51 207.6 329 41.9
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 1.9e-51 207.2 307 43.6
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.9e-51 207.2 311 42.4
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.5e-51 206.8 235 50.6
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 3.2e-51 206.5 334 41.3
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 4.2e-51 206.1 300 45.7
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.2e-51 206.1 324 42.0
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 5.5e-51 205.7 326 43.3
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 5.5e-51 205.7 324 41.4
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 7.1e-51 205.3 318 44.3
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.6e-50 204.1 330 42.1
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 2.1e-50 203.8 305 44.6
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 2.1e-50 203.8 227 50.2
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 2.1e-50 203.8 330 41.8
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 2.7e-50 203.4 208 53.8
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 3.5e-50 203.0 223 52.0
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 7.9e-50 201.8 334 43.1
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.3e-49 201.1 336 42.0
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.3e-49 201.1 341 39.9
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.3e-49 201.1 326 41.1
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 3.9e-49 199.5 339 40.7
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 6.7e-49 198.7 205 49.3
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.1e-48 198.0 338 39.1
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 1.1e-48 198.0 207 54.6
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.5e-48 197.6 347 40.9
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 2.5e-48 196.8 323 39.6
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.5e-48 196.8 336 39.3
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 3.3e-48 196.4 343 38.8
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 4.3e-48 196.1 343 38.5
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 4.3e-48 196.1 343 38.5
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 5.7e-48 195.7 343 39.1
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 5.7e-48 195.7 343 39.1
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 5.7e-48 195.7 205 50.7
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 7.4e-48 195.3 328 39.6
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.3e-47 194.5 208 52.4
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.6e-47 194.1 336 39.0
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.6e-47 194.1 206 51.9
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.6e-47 194.1 338 40.2
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.6e-47 194.1 188 58.0
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.8e-47 193.4 205 50.2
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 3.7e-47 193.0 342 36.8
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 3.7e-47 193.0 331 39.3
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 3.7e-47 193.0 327 39.1
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 3.7e-47 193.0 331 39.3
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 3.7e-47 193.0 342 36.8
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 3.7e-47 193.0 331 39.3
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 3.7e-47 193.0 342 36.8
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 4.8e-47 192.6 343 38.8
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 4.8e-47 192.6 343 39.4
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 4.8e-47 192.6 343 38.8
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.8e-47 192.6 339 37.8
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 6.3e-47 192.2 342 36.5
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 8.2e-47 191.8 345 40.6
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.1e-46 191.4 330 38.5
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.8e-46 190.7 208 51.0
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.8e-46 190.7 338 37.3
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 4.1e-46 189.5 338 39.9
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 5.3e-46 189.1 330 38.2
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.5e-45 187.6 329 38.3
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.5e-45 187.6 177 58.2
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.6e-45 186.8 338 37.0
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 5.9e-45 185.7 176 55.1
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 1.7e-44 184.1 152 60.5
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 5.0e-44 182.6 339 37.5
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 5.0e-44 182.6 214 49.5
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 5.5e-43 179.1 342 36.5
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.2e-42 177.9 337 37.4
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.5e-40 171.0 206 48.1
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 9.7e-40 168.3 206 47.1
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 9.7e-40 168.3 228 45.2
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 9.7e-40 168.3 231 45.0
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 6.3e-39 165.6 229 43.2
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 4.5e-37 159.5 229 42.4
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 1.3e-28 131.3 86 79.1
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 5.0e-28 129.4 182 44.5
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.1e-27 128.3 138 50.0
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 1.6e-26 124.4 138 50.7
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 6.1e-26 122.5 206 36.9
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.3e-24 116.7 199 37.7
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 1.8e-22 110.9 178 35.4
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 4.5e-21 106.3 199 34.2
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.3e-15 88.2 106 48.1
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.8e-15 86.3 87 51.7
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.3e-09 67.4 67 53.7
Glyma.03G121400 Glycine max HOM05D004300 ORTHO05D005171 7.5e-08 62.4 40 75.0
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 6.3e-07 59.3 93 34.4
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 1.8e-06 57.8 91 37.4
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.1e-06 57.0 72 37.5
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.1e-06 57.0 72 37.5


User provided reference genes

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