Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 4.7e-152 541.2 281 100.0
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 1.0e-130 470.3 282 88.7
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 1.6e-128 463.0 282 87.2
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 7.6e-118 427.6 282 80.1
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 4.2e-116 421.8 286 80.1
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 1.3e-109 400.2 288 76.4
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 3.2e-108 395.6 288 75.3
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 9.3e-108 394.0 286 74.8
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 1.3e-104 383.6 282 72.3
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 1.3e-104 383.6 282 72.3
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 6.5e-101 371.3 281 73.0
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.0e-97 359.8 288 69.1
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 4.4e-97 358.6 299 68.6
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 7.4e-97 357.8 288 68.1
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.8e-96 355.9 288 68.4
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 1.2e-94 350.5 290 66.9
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 2.9e-93 345.9 289 65.7
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 6.5e-93 344.7 287 65.9
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 8.5e-93 344.4 286 66.8
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 2.7e-91 339.3 290 65.5
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 5.7e-89 331.6 290 64.8
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 3.7e-88 328.9 291 63.2
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 1.8e-87 326.6 290 64.1
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 3.1e-87 325.9 286 61.9
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 5.3e-87 325.1 291 61.9
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 9.1e-87 324.3 296 62.2
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 6.5e-85 318.2 285 60.4
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 8.5e-85 317.8 288 62.5
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 1.5e-84 317.0 288 59.7
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 1.9e-84 316.6 303 60.1
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 4.2e-84 315.5 283 62.9
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 4.2e-84 315.5 288 58.7
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 7.2e-84 314.7 286 59.8
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 9.4e-84 314.3 274 64.6
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 1.6e-83 313.5 287 59.2
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 2.7e-83 312.8 287 60.6
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 3.6e-83 312.4 291 60.1
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.7e-83 312.0 302 57.9
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 1.0e-82 310.8 302 59.3
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 1.4e-82 310.5 290 61.4
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 8.8e-82 307.8 301 57.5
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.3e-81 305.8 302 57.0
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 4.4e-81 305.4 287 58.5
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 7.5e-81 304.7 283 56.9
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.7e-80 303.5 286 58.0
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.8e-80 302.8 293 58.7
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 3.7e-80 302.4 330 53.0
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 6.3e-80 301.6 302 56.3
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 1.4e-79 300.4 290 57.9
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.8e-79 300.1 257 65.4
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 1.8e-79 300.1 283 57.6
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 2.0e-78 296.6 288 57.6
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.7e-77 293.5 292 59.2
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 2.2e-77 293.1 291 58.8
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 1.5e-76 290.4 290 57.6
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 2.5e-76 289.7 309 52.8
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 3.2e-76 289.3 283 57.2
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 3.6e-75 285.8 302 54.3
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 3.6e-75 285.8 290 57.6
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.0e-74 284.3 322 52.5
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 1.4e-74 283.9 283 56.9
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 4.4e-73 278.9 283 55.8
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 4.4e-73 278.9 298 54.7
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 2.8e-72 276.2 294 53.7
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 4.8e-72 275.4 287 55.1
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 4.8e-72 275.4 283 55.8
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 8.3e-72 274.6 166 84.3
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.1e-71 274.2 285 54.4
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.1e-71 274.2 277 57.8
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.4e-71 273.1 285 54.0
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 5.4e-71 271.9 290 53.1
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 3.5e-70 269.2 283 54.1
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 3.5e-70 269.2 291 54.6
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 7.7e-70 268.1 289 53.6
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.3e-69 266.5 285 54.7
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 3.8e-69 265.8 297 52.2
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 3.8e-69 265.8 284 55.6
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 1.9e-68 263.5 297 53.5
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 1.9e-68 263.5 289 54.0
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.5e-68 263.1 284 54.9
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 1.6e-67 260.4 289 52.6
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.0e-66 257.7 286 50.7
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 1.4e-66 257.3 284 54.2
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.4e-65 252.7 283 52.7
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 4.4e-65 252.3 286 50.7
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 1.7e-64 250.4 285 53.3
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 3.7e-64 249.2 290 49.7
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 7.0e-63 245.0 286 51.4
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 5.9e-62 241.9 287 51.2
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 5.9e-62 241.9 276 51.8
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 7.8e-62 241.5 287 50.2
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 1.3e-61 240.7 288 50.0
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.3e-61 240.7 170 74.1
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.9e-60 236.9 266 54.9
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 3.3e-60 236.1 302 48.3
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 4.7e-59 232.3 288 49.7
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 1.0e-58 231.1 287 48.4
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 9.8e-57 224.6 284 47.2
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 8.3e-56 221.5 287 46.0
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 3.2e-55 219.5 286 45.1
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 6.0e-54 215.3 321 42.7
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.3e-50 203.4 282 45.0
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 5.2e-42 175.6 287 41.5
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 7.8e-38 161.8 132 61.4
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 4.3e-36 156.0 296 35.8
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 8.1e-35 151.8 130 60.8
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 5.2e-34 149.1 339 32.4
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 6.8e-34 148.7 295 41.0
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 3.8e-32 142.9 129 58.1
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 1.4e-31 141.0 292 33.6
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 2.4e-31 140.2 130 55.4
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 5.2e-26 122.5 173 42.8
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 4.9e-24 115.9 242 39.7
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 3.2e-23 113.2 122 48.4
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 1.9e-20 104.0 90 61.1
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 2.5e-20 103.6 125 48.8
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.1e-18 98.2 78 62.8
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.5e-17 94.4 61 80.3
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 4.5e-17 92.8 92 53.3
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.3e-16 91.3 156 39.1
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 7.1e-15 85.5 290 31.0
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.1e-14 84.0 73 56.2
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 6.7e-13 79.0 109 45.0
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 9.6e-12 75.1 55 67.3
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 2.8e-11 73.6 109 43.1
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.1e-10 71.6 172 33.1
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 2.4e-10 70.5 90 43.3
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 2.9e-08 63.5 117 34.2


User provided reference genes

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