Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 8.0e-166 587.0 299 100.0
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 9.9e-140 500.4 302 85.1
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.1e-135 486.9 307 82.4
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 5.6e-135 484.6 307 81.1
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 8.1e-134 480.7 307 81.8
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 5.2e-133 478.0 307 81.4
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 5.2e-133 478.0 307 80.1
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 7.8e-129 464.2 300 77.7
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.7e-128 463.0 295 78.3
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.5e-127 459.9 302 77.8
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 2.5e-127 459.1 299 76.3
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 3.3e-127 458.8 299 76.3
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 2.1e-126 456.1 301 74.4
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 2.8e-126 455.7 301 74.4
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 4.7e-126 454.9 286 78.7
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.1e-125 453.8 299 76.6
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.4e-125 453.4 303 75.6
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.8e-125 453.0 299 75.6
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.4e-125 452.6 287 77.0
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.1e-125 452.2 299 75.3
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 5.2e-125 451.4 309 74.4
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 1.2e-124 450.3 299 75.3
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 2.6e-124 449.1 308 74.7
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 3.4e-124 448.7 301 76.4
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 3.4e-124 448.7 286 77.3
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 4.4e-124 448.4 309 75.7
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.7e-123 446.4 301 74.1
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.9e-122 443.0 298 73.2
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 5.4e-122 441.4 287 76.7
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 7.1e-122 441.0 299 74.2
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 7.1e-122 441.0 301 72.8
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 9.3e-122 440.7 300 73.3
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.1e-121 439.5 298 73.5
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 2.7e-121 439.1 300 72.7
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.7e-121 439.1 301 74.1
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 3.5e-121 438.7 298 73.8
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.5e-121 438.7 298 73.5
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.6e-121 438.3 297 75.1
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.6e-121 438.3 298 73.5
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 4.6e-121 438.3 293 74.4
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 7.8e-121 437.6 309 74.1
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 2.3e-120 436.0 285 76.1
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 3.0e-120 435.6 309 72.8
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 5.1e-120 434.9 309 72.5
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.5e-119 433.3 302 73.2
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.5e-119 432.6 298 71.1
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.5e-119 432.6 298 71.1
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.3e-118 430.3 298 70.8
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.1e-118 429.5 301 71.8
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 3.6e-118 428.7 297 74.7
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 8.1e-118 427.6 290 73.8
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 2.4e-117 426.0 288 73.3
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 2.4e-117 426.0 297 71.0
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 3.1e-117 425.6 289 73.0
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 5.3e-117 424.9 288 72.9
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 1.5e-116 423.3 297 72.4
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 1.5e-116 423.3 347 64.3
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 3.4e-116 422.2 287 73.5
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.4e-116 422.2 304 70.4
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 4.5e-116 421.8 289 73.0
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 4.9e-115 418.3 289 71.3
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.4e-115 417.9 293 72.0
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 8.4e-115 417.5 296 70.3
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 8.4e-115 417.5 290 71.7
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 1.1e-114 417.2 289 70.9
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.4e-114 416.8 289 70.6
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.4e-114 416.0 300 73.0
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.4e-114 416.0 290 72.4
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 9.3e-114 414.1 298 71.1
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.2e-113 413.7 335 65.4
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 2.7e-113 412.5 298 70.1
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 3.5e-113 412.1 304 68.1
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.0e-112 410.6 271 73.4
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.0e-112 410.6 288 70.5
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.0e-112 410.6 296 70.3
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.3e-112 410.2 301 68.1
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 3.0e-112 409.1 289 69.9
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 3.9e-112 408.7 300 72.0
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.5e-111 406.8 295 68.1
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.9e-111 406.4 287 70.4
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.9e-111 406.4 287 70.0
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 2.5e-111 406.0 287 70.0
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 3.3e-111 405.6 291 70.1
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 3.3e-111 405.6 287 70.0
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 5.6e-111 404.8 338 62.7
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 5.6e-111 404.8 305 68.9
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 7.4e-111 404.4 295 68.5
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 7.4e-111 404.4 287 70.0
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 9.6e-111 404.1 378 57.7
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.1e-110 402.9 249 78.3
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 2.8e-110 402.5 295 68.1
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.8e-110 402.5 295 67.8
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 4.8e-110 401.7 298 68.1
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 6.2e-110 401.4 295 68.1
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.1e-109 400.6 290 69.0
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.1e-109 400.6 280 70.4
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.1e-109 400.6 294 67.3
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.8e-109 399.8 298 67.8
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 1.8e-109 399.8 312 67.0
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 3.1e-109 399.1 277 74.0
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 3.1e-109 399.1 293 69.3
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 5.3e-109 398.3 292 68.5
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 9.0e-109 397.5 293 69.3
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 3.4e-108 395.6 301 66.8
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.4e-108 395.6 289 69.9
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 5.8e-108 394.8 289 69.9
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 5.8e-108 394.8 309 67.0
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.3e-107 393.7 249 77.9
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.2e-107 392.9 271 72.3
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 2.2e-107 392.9 335 62.7
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 4.9e-107 391.7 292 67.5
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 4.9e-107 391.7 267 70.8
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 8.4e-107 391.0 289 66.8
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.1e-106 390.6 283 68.6
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.9e-106 389.8 282 68.1
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 7.1e-106 387.9 330 61.2
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 3.3e-103 379.0 275 67.3
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 5.6e-103 378.3 291 65.3
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 1.6e-102 376.7 302 64.9
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 3.1e-101 372.5 287 65.5
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 2.2e-99 366.3 291 63.6
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.9e-99 365.2 283 66.4
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.6e-97 360.1 292 62.3
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.6e-97 360.1 298 62.8
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 3.5e-97 359.0 294 62.2
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.0e-96 357.5 299 63.9
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 8.7e-96 354.4 229 75.5
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 5.3e-93 345.1 282 62.4
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 3.0e-88 329.3 265 60.8
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.8e-86 322.8 220 74.1
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 3.3e-79 299.3 199 76.4
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.7e-78 297.0 280 52.5
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 2.8e-78 296.2 264 59.1
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 3.7e-78 295.8 279 53.0
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 3.7e-78 295.8 271 55.7
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 3.1e-77 292.7 295 52.9
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 5.3e-77 292.0 295 54.6
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 9.1e-77 291.2 292 53.1
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 3.8e-75 285.8 295 54.6
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 6.5e-75 285.0 279 52.7
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.0e-72 277.7 276 51.1
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.8e-72 276.9 276 50.7
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 2.6e-71 273.1 193 74.1
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.7e-70 270.4 291 52.6
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 3.8e-67 259.2 227 59.0
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 4.4e-63 245.7 209 64.1
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.4e-61 240.7 308 49.0
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.1e-61 238.0 228 52.6
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.1e-58 231.1 180 63.9
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 2.3e-56 223.4 221 50.2
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 2.8e-54 216.5 173 62.4
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 8.3e-54 214.9 148 68.9
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 2.7e-52 209.9 251 46.6
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 6.6e-51 205.3 149 69.1
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 5.7e-47 192.2 287 35.2
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 9.2e-45 184.9 141 66.0
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-32 144.4 109 68.8
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 3.1e-32 143.3 291 32.3
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 6.0e-28 129.0 331 27.5
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.7e-27 127.5 77 83.1
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 7.3e-26 122.1 113 58.4
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 3.1e-24 116.7 124 54.0
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 5.8e-23 112.5 212 34.9
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.5e-18 97.8 287 24.7
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 3.3e-18 96.7 261 31.0
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.5e-10 70.5 184 34.8
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 1.4e-08 64.7 49 63.3
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 5.8e-07 59.3 56 51.8


User provided reference genes

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