Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 1.2e-231 806.2 432 100.0
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 4.3e-205 718.0 434 86.9
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.9e-192 676.0 403 86.6
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 5.5e-176 621.3 441 78.5
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 5.5e-176 621.3 439 76.3
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 6.8e-174 614.4 440 75.9
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.6e-173 612.5 435 75.2
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 7.7e-170 600.9 435 75.9
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 6.1e-167 591.3 433 73.2
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.1e-150 537.3 393 73.8
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 2.1e-146 523.1 397 71.3
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 2.7e-146 522.7 412 68.0
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.6e-146 521.9 393 72.0
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 1.3e-145 520.4 438 67.4
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 6.6e-145 518.1 397 67.5
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 1.9e-144 516.5 434 68.4
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 2.5e-144 516.2 393 71.5
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.5e-144 516.2 393 71.5
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 2.5e-144 516.2 396 67.2
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 3.3e-144 515.8 392 70.4
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 7.3e-144 514.6 391 70.1
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 9.5e-144 514.2 391 70.1
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.2e-143 513.8 393 71.2
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.6e-143 513.5 393 71.2
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 4.7e-143 511.9 392 70.2
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 6.8e-142 508.1 390 70.0
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.2e-141 507.3 401 69.1
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.6e-141 506.1 421 65.8
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 3.4e-141 505.8 396 66.4
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 3.4e-141 505.8 433 64.7
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.4e-141 505.4 438 66.9
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 9.9e-141 504.2 440 64.5
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.3e-140 503.8 435 66.4
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 8.3e-140 501.1 395 67.1
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 8.3e-140 501.1 396 65.7
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 2.4e-139 499.6 435 64.8
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 4.6e-138 495.4 390 66.7
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 3.9e-137 492.3 391 68.3
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.1e-137 491.9 391 68.3
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.1e-136 490.7 393 68.2
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 3.3e-136 489.2 391 67.0
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.6e-135 486.9 394 67.5
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 2.1e-135 486.5 396 67.7
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 3.6e-135 485.7 395 66.8
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 3.1e-134 482.6 406 63.8
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 5.2e-134 481.9 437 64.5
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 6.8e-134 481.5 396 63.6
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.9e-134 481.1 396 63.9
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 8.9e-134 481.1 396 63.9
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 2.2e-132 476.5 395 64.8
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.2e-132 476.5 392 65.3
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 2.9e-132 476.1 391 64.5
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 3.8e-132 475.7 394 63.5
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 4.9e-132 475.3 391 64.5
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 1.9e-131 473.4 390 64.6
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 2.4e-131 473.0 389 64.5
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 3.2e-131 472.6 433 62.6
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 7.1e-131 471.5 439 61.0
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 2.1e-130 469.9 393 65.6
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.7e-130 469.5 440 63.0
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.7e-130 469.5 391 63.4
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 3.5e-130 469.2 410 62.9
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 2.3e-129 466.5 393 65.1
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 3.9e-129 465.7 393 62.1
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 3.9e-129 465.7 397 63.0
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 5.1e-129 465.3 391 65.0
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 5.1e-129 465.3 436 61.0
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 8.7e-129 464.5 400 64.0
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.5e-128 463.0 444 62.4
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 1.3e-127 460.7 398 62.6
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 8.1e-127 458.0 392 63.3
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 8.1e-127 458.0 398 63.8
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 5.3e-126 455.3 389 63.8
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 9.0e-126 454.5 392 64.0
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.6e-125 453.0 394 62.4
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 7.6e-125 451.4 401 61.6
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 9.9e-125 451.1 394 63.5
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.7e-124 450.3 391 61.4
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.2e-124 449.9 393 62.6
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.1e-123 447.6 398 61.6
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.4e-123 447.2 393 62.6
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.9e-123 446.8 393 62.3
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 2.4e-123 446.4 391 61.4
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.2e-123 446.0 412 64.6
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 4.2e-123 445.7 397 61.2
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 7.1e-123 444.9 395 62.0
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.2e-122 444.1 399 60.9
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 2.1e-122 443.4 391 62.1
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 4.6e-122 442.2 439 59.9
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 7.8e-122 441.4 366 64.5
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.7e-121 440.3 391 61.4
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 2.3e-121 439.9 393 62.1
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 3.9e-121 439.1 398 61.3
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 6.6e-121 438.3 391 61.1
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 6.6e-121 438.3 391 61.1
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 6.6e-121 438.3 397 60.7
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 9.6e-120 434.5 395 59.7
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 2.1e-119 433.3 406 59.4
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 3.6e-119 432.6 397 59.9
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 6.4e-116 421.8 390 59.2
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.9e-115 420.2 405 58.0
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 4.2e-115 419.1 390 59.5
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.2e-114 417.5 388 59.3
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 3.5e-114 416.0 395 59.5
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 4.6e-114 415.6 395 59.5
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 6.0e-114 415.2 410 57.8
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 6.0e-114 415.2 405 58.3
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 6.7e-113 411.8 408 54.7
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.3e-111 407.5 392 58.4
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 6.2e-111 405.2 445 55.7
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 3.1e-110 402.9 434 56.5
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.1e-110 402.9 401 57.1
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 4.5e-109 399.1 443 54.9
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 5.5e-107 392.1 238 82.4
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.1e-106 390.2 395 54.7
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 7.9e-106 388.3 398 53.8
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 2.3e-105 386.7 398 53.5
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 5.1e-105 385.6 418 53.8
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 5.7e-104 382.1 393 55.2
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 4.8e-103 379.0 312 63.5
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 6.9e-102 375.2 394 54.1
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.8e-100 369.4 392 52.0
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 5.1e-97 359.0 309 63.4
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 7.9e-82 308.5 316 54.1
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 8.5e-68 261.9 311 47.6
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.5e-64 251.1 394 41.1
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 8.5e-60 235.3 235 57.4
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 8.0e-58 228.8 206 68.0
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 3.1e-54 216.9 238 48.7
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.4e-54 216.1 166 69.3
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 5.9e-53 212.6 223 50.2
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 4.2e-51 206.5 204 58.3
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.1e-50 204.1 198 63.6
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 3.7e-47 193.4 156 67.9
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 3.2e-46 190.3 195 54.9
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 7.3e-43 179.1 308 37.0
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 9.5e-43 178.7 354 35.0
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.7e-20 104.8 119 53.8
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.1e-13 81.3 75 56.0
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.5e-13 80.5 79 55.7
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 3.1e-09 67.4 161 33.5
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 3.4e-08 63.9 148 33.8
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 2.4e-06 57.8 36 66.7


User provided reference genes

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