Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 2.4e-113 412.1 204 100.0
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 6.4e-106 387.5 204 93.6
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 8.6e-103 377.1 204 90.2
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 1.9e-97 359.4 204 85.3
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 3.2e-97 358.6 204 85.3
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 1.7e-95 352.8 204 83.8
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 4.3e-94 348.2 204 79.9
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 7.3e-94 347.4 204 80.4
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.2e-93 346.7 204 80.4
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 2.1e-93 345.9 204 79.9
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.3e-92 342.4 204 79.4
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 3.1e-92 342.0 204 79.9
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 4.9e-90 334.7 204 77.5
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 4.9e-90 334.7 201 81.1
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 5.6e-86 321.2 203 74.4
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.1e-81 307.0 204 68.6
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 2.1e-80 302.8 204 67.6
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 2.1e-80 302.8 204 67.6
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 2.5e-78 295.8 203 67.5
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 2.1e-77 292.7 201 65.7
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 6.2e-77 291.2 204 63.2
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.4e-76 289.3 205 63.9
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 8.9e-76 287.3 199 66.3
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 2.6e-75 285.8 205 63.9
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 3.4e-75 285.4 204 63.7
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 3.4e-75 285.4 201 63.2
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 9.9e-75 283.9 208 64.4
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.3e-74 283.5 204 62.3
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.2e-74 282.7 204 63.2
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 3.8e-74 282.0 199 64.8
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 1.1e-73 280.4 201 64.7
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 5.4e-73 278.1 201 61.2
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.4e-73 278.1 205 64.4
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.4e-73 278.1 205 64.4
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.4e-73 278.1 204 61.8
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.1e-73 277.7 203 64.5
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.1e-73 277.7 203 64.5
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.2e-72 276.9 204 63.2
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 4.6e-72 275.0 201 59.7
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 4.6e-72 275.0 204 62.3
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 6.0e-72 274.6 203 62.1
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 1.0e-71 273.9 199 63.8
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.3e-71 273.5 204 62.3
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 2.3e-71 272.7 205 62.0
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 6.6e-71 271.2 205 61.0
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 8.7e-71 270.8 204 62.7
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.5e-70 270.0 201 62.2
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 7.3e-70 267.7 204 62.7
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 3.6e-69 265.4 201 62.7
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 3.6e-69 265.4 204 60.8
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.8e-69 265.0 204 61.3
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 4.8e-69 265.0 206 62.1
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 6.2e-69 264.6 198 63.1
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 6.2e-69 264.6 204 61.8
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.1e-68 263.8 201 63.2
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 1.8e-68 263.1 201 61.7
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 3.1e-68 262.3 201 62.7
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 4.0e-68 261.9 204 61.8
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 6.9e-68 261.2 201 58.2
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.2e-67 260.4 196 62.8
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 2.0e-67 259.6 201 60.7
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 3.4e-67 258.8 198 63.6
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 9.9e-67 257.3 201 56.2
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.7e-66 256.5 201 59.7
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 2.9e-66 255.8 201 61.2
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 3.8e-66 255.4 201 56.2
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 4.9e-66 255.0 201 60.2
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 8.4e-66 254.2 201 60.2
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.9e-65 253.1 201 56.7
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 3.2e-65 252.3 201 57.7
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 9.3e-65 250.8 201 55.7
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.6e-64 250.0 203 57.6
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.6e-64 250.0 203 57.1
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.6e-64 250.0 204 58.3
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.7e-64 249.2 202 57.4
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 4.6e-64 248.4 203 57.1
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 7.9e-64 247.7 204 55.4
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 1.3e-63 246.9 201 56.2
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.7e-63 246.5 205 57.6
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 5.1e-63 245.0 198 55.6
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.9e-62 243.0 205 57.6
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.9e-62 243.0 199 55.3
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 4.3e-62 241.9 205 57.6
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 5.6e-62 241.5 207 56.5
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 7.4e-62 241.1 208 56.7
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.6e-61 240.0 204 57.4
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 2.8e-61 239.2 205 56.6
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.8e-61 239.2 205 56.1
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 3.6e-61 238.8 200 54.0
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.6e-61 238.8 208 55.8
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.4e-60 236.9 207 54.6
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.1e-60 235.7 208 55.3
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 9.0e-60 234.2 201 52.2
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.3e-58 230.3 209 52.6
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.7e-58 229.9 204 53.9
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 2.9e-58 229.2 206 52.9
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 3.8e-58 228.8 203 51.2
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 6.4e-58 228.0 203 50.2
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.1e-57 227.3 207 50.7
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.1e-57 227.3 206 53.4
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.4e-57 226.1 204 52.0
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 3.0e-55 219.2 171 56.7
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.1e-55 218.4 203 52.7
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 7.4e-54 214.5 206 51.5
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 3.1e-52 209.1 201 47.3
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 5.3e-52 208.4 172 55.2
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 5.3e-52 208.4 202 50.5
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.2e-51 207.2 192 49.5
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.5e-51 206.8 208 49.5
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.0e-51 206.5 201 47.3
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.6e-51 206.1 209 51.7
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.7e-50 203.4 178 54.5
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.4e-49 200.3 201 45.3
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.5e-48 195.7 207 48.3
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 7.9e-48 194.5 132 68.9
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 7.9e-48 194.5 208 46.6
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.8e-47 193.4 203 43.8
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 2.3e-47 193.0 203 44.3
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 6.7e-47 191.4 202 44.6
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 6.7e-47 191.4 204 44.6
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 8.7e-47 191.0 208 48.6
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 7.4e-46 188.0 209 43.5
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 2.8e-45 186.0 203 41.4
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 9.0e-44 181.0 203 41.4
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.4e-43 179.1 186 49.5
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.2e-41 172.6 198 41.9
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 3.2e-41 172.6 200 45.0
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 9.3e-41 171.0 96 90.6
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 8.7e-39 164.5 200 42.0
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.6e-37 160.2 198 41.4
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.1e-36 156.0 200 40.5
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.5e-35 153.7 203 37.4
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.2e-33 145.6 203 41.9
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 6.1e-32 141.7 207 37.2
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 1.4e-31 140.6 103 59.2
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.0e-31 139.4 199 37.2
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.1e-31 138.7 198 38.9
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.3e-29 134.0 98 66.3
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.8e-29 132.9 208 35.1
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 8.2e-21 104.8 129 37.2
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 7.7e-19 98.2 87 47.1
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.3e-15 86.7 203 27.1
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 3.0e-15 86.3 135 38.5
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 7.7e-11 71.6 193 30.6
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 2.9e-10 69.7 194 28.4
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.9e-09 67.0 170 30.0


User provided reference genes

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