Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 5.0e-179 630.9 312 100.0
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 3.8e-134 481.9 318 75.8
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 7.9e-132 474.2 318 76.1
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 3.1e-120 435.6 315 69.5
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 4.5e-119 431.8 306 69.9
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 2.7e-116 422.5 305 69.5
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 1.8e-112 409.8 303 68.0
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 4.1e-112 408.7 330 63.3
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 6.9e-112 407.9 327 63.9
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 2.0e-111 406.4 321 64.8
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 1.7e-110 403.3 315 65.1
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.2e-108 397.1 331 61.9
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 8.8e-107 391.0 336 60.7
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 2.9e-102 375.9 289 64.0
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 3.6e-100 369.0 314 57.0
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 4.8e-97 358.6 269 61.0
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 9.1e-96 354.4 321 57.0
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 2.7e-95 352.8 269 60.2
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 4.5e-95 352.1 270 61.9
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 3.8e-94 349.0 290 56.2
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.8e-94 349.0 307 54.4
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.5e-93 347.1 265 60.0
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 3.2e-93 345.9 321 55.8
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 7.2e-93 344.7 274 57.7
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 9.4e-93 344.4 324 53.1
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.6e-92 343.6 320 52.8
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.6e-92 343.6 312 55.4
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.7e-92 342.8 307 54.7
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 4.7e-92 342.0 314 53.2
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 2.3e-91 339.7 268 59.0
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 3.0e-91 339.3 307 55.0
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 4.0e-91 339.0 297 55.2
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.0e-91 339.0 319 54.2
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.0e-91 339.0 319 54.2
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 8.8e-91 337.8 301 55.8
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.0e-90 336.7 303 54.5
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 5.7e-90 335.1 303 54.8
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 9.8e-90 334.3 201 81.1
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.7e-89 333.6 309 54.4
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.2e-89 333.2 268 58.2
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 2.4e-88 329.7 263 58.9
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 4.1e-88 328.9 274 55.8
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 7.0e-88 328.2 307 52.1
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.5e-87 325.5 294 53.7
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 1.0e-86 324.3 317 52.4
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.7e-86 323.6 297 53.9
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 1.7e-86 323.6 266 57.1
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 3.2e-85 319.3 266 56.0
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.2e-85 318.9 322 50.9
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 2.1e-84 316.6 273 56.0
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 2.8e-84 316.2 290 51.4
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 2.8e-84 316.2 266 55.3
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 6.1e-84 315.1 270 54.8
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 1.4e-83 313.9 267 55.1
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 3.0e-83 312.8 309 51.5
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 5.2e-83 312.0 271 56.5
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 6.8e-83 311.6 296 53.7
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 2.6e-82 309.7 318 52.5
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 4.4e-82 308.9 296 49.3
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 5.7e-82 308.5 268 55.2
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 7.5e-82 308.1 271 53.5
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 7.5e-82 308.1 265 55.5
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 9.8e-82 307.8 299 48.8
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.8e-81 306.2 266 53.0
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 6.3e-81 305.1 305 50.8
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 3.1e-80 302.8 300 50.3
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 4.1e-80 302.4 266 51.5
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 7.0e-80 301.6 312 49.4
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 9.2e-80 301.2 267 51.3
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 4.5e-79 298.9 278 52.5
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 5.9e-79 298.5 291 49.5
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 7.8e-79 298.1 271 53.1
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 2.3e-78 296.6 271 52.8
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 3.8e-78 295.8 271 53.5
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 6.6e-78 295.0 306 48.7
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.5e-77 293.9 271 53.1
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.5e-77 293.9 270 53.3
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.5e-77 293.1 308 49.7
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 3.3e-77 292.7 269 52.0
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 3.3e-77 292.7 269 53.2
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 5.6e-77 292.0 273 52.7
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 7.3e-77 291.6 306 51.3
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 9.5e-77 291.2 276 49.3
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 9.5e-77 291.2 308 48.1
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 2.8e-76 289.7 276 49.6
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 6.1e-76 288.5 284 50.0
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 1.8e-75 287.0 267 50.6
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.8e-75 287.0 270 51.5
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.3e-75 286.6 284 48.2
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 2.3e-75 286.6 318 45.9
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 5.2e-75 285.4 272 51.1
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.5e-74 283.9 270 51.5
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.0e-74 283.5 306 48.7
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 9.8e-74 281.2 314 44.6
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.7e-73 280.4 317 44.8
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.9e-73 279.6 276 48.6
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 7.0e-72 275.0 303 45.2
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.2e-71 274.2 313 44.1
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.6e-71 273.9 279 48.0
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 5.9e-71 271.9 305 46.2
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.7e-70 270.4 282 48.6
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 2.3e-70 270.0 303 47.9
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 8.0e-68 261.5 282 48.9
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.8e-67 260.4 308 44.2
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 2.3e-67 260.0 266 45.9
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.3e-67 260.0 202 61.4
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.3e-67 260.0 202 61.4
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.2e-67 258.8 301 44.5
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.6e-66 256.5 272 47.4
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 3.4e-66 256.1 263 51.7
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 5.8e-66 255.4 267 45.7
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 7.5e-66 255.0 267 49.1
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 4.9e-65 252.3 275 44.7
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 8.3e-65 251.5 305 42.0
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 4.6e-63 245.7 267 43.4
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.1e-61 241.1 272 41.9
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.5e-61 240.7 280 46.1
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.8e-60 236.5 250 46.8
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 3.6e-60 236.1 198 58.6
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.2e-58 231.1 265 43.0
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 7.1e-56 221.9 236 47.5
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.9e-53 213.8 311 37.9
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 3.1e-51 206.5 293 39.2
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 9.9e-50 201.4 206 49.0
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.3e-49 201.1 322 36.3
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.7e-49 200.7 240 41.2
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.0e-46 189.9 172 50.6
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 3.0e-46 189.9 178 51.7
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.1e-43 181.4 268 37.7
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.0e-43 179.5 304 35.2
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 3.4e-42 176.4 261 35.6
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.8e-41 172.9 263 36.1
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.6e-39 167.5 265 34.3
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 3.5e-39 166.4 268 36.9
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.3e-38 164.5 268 32.8
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.7e-38 164.1 262 34.0
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 2.3e-30 137.1 93 72.0
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 1.5e-29 134.4 116 62.1
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.2e-26 124.8 206 36.4
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.6e-23 114.4 98 56.1
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.6e-18 97.1 127 37.8
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 2.9e-17 93.6 88 48.9
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.5e-16 90.5 201 28.9
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.1e-14 82.8 96 43.8
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.1e-14 82.8 96 43.8
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 6.7e-14 82.4 140 36.4
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 4.1e-11 73.2 261 24.5
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 6.9e-11 72.4 193 28.5
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 3.8e-09 66.6 170 28.2


User provided reference genes

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