Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3657 Trifolium pratense HOM05D006478 ORTHO05D008071 7.5e-87 323.9 178 100.0
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 3.9e-75 285.0 180 88.9
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 3.2e-69 265.4 180 82.8
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 1.2e-68 263.5 180 82.8
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 1.3e-67 260.0 180 81.1
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 1.2e-55 220.3 181 69.1
Lj6g0019546 Lotus japonicus HOM05D006478 ORTHO05D008071 8.4e-54 214.2 181 68.5
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 1.3e-49 200.3 181 65.7
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 7.6e-47 191.0 182 61.0
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 1.3e-46 190.3 180 62.8
Glyma.09G257500 Glycine max HOM05D006478 ORTHO05D008071 2.1e-44 183.0 216 53.7
arahy.Tifrunner.gnm1.ann1.LW4644 Arachis hypogaea HOM05D006478 ORTHO05D008071 3.3e-42 175.6 149 66.4
Lj1g0017005 Lotus japonicus HOM05D006478 ORTHO05D008071 2.8e-33 146.0 144 63.2
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 2.9e-30 136.0 180 47.2
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 3.8e-30 135.6 181 47.0
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 1.1e-29 134.0 178 45.5
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 3.2e-29 132.5 178 45.5
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 4.2e-29 132.1 180 47.8
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 9.3e-29 131.0 178 46.6
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 1.2e-28 130.6 178 46.1
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 2.1e-28 129.8 177 46.9
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 4.6e-28 128.6 176 47.7
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 6.1e-28 128.3 178 46.1
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 1.3e-27 127.1 179 47.5
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 1.8e-27 126.7 178 46.1
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 1.8e-27 126.7 181 46.4
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 2.3e-27 126.3 178 42.7
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 3.0e-27 125.9 179 44.1
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 5.1e-27 125.2 178 43.8
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 5.1e-27 125.2 178 42.1
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 8.8e-27 124.4 179 42.5
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 8.8e-27 124.4 178 43.8
VMungo1127G0460 Vigna mungo HOM05D006478 ORTHO05D008071 8.8e-27 124.4 135 57.0
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 1.1e-26 124.0 178 43.3
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 1.9e-26 123.2 181 47.0
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 1.9e-26 123.2 178 43.8
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.9e-26 123.2 178 43.3
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 1.9e-26 123.2 178 45.5
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 4.3e-26 122.1 180 43.9
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 5.7e-26 121.7 180 42.8
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 7.4e-26 121.3 179 43.6
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 9.7e-26 120.9 178 42.7
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 1.3e-25 120.6 180 42.8
Medtr1g069420 Medicago truncatula HOM05D002356 ORTHO05D002546 1.7e-25 120.2 77 88.3
Atru.chr12.858 Acer truncatum HOM05D006478 ORTHO05D008071 6.3e-25 118.2 125 55.2
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 8.2e-25 117.9 179 43.0
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 1.4e-24 117.1 183 43.2
CARHR264290 Cardamine hirsuta HOM05D006478 ORTHO05D008071 2.4e-24 116.3 181 45.9
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 5.3e-24 115.2 178 41.6
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 5.3e-24 115.2 178 41.6
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 6.9e-24 114.8 125 49.6
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 1.5e-23 113.6 178 42.7
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 2.6e-23 112.8 168 44.0
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 3.4e-23 112.5 178 41.6
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 5.9e-23 111.7 178 40.4
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 7.7e-23 111.3 181 43.1
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 7.7e-23 111.3 179 41.3
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 7.7e-23 111.3 181 43.6
BcaB08g35507 Brassica carinata HOM05D006478 ORTHO05D008071 1.0e-22 110.9 182 42.9
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 1.3e-22 110.5 178 41.6
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 1.3e-22 110.5 159 43.4
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 1.7e-22 110.2 181 43.6
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 1.7e-22 110.2 178 42.1
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 2.2e-22 109.8 181 44.2
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 2.9e-22 109.4 182 42.9
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 2.9e-22 109.4 182 42.9
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 2.9e-22 109.4 182 42.9
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 3.8e-22 109.0 184 42.4
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 3.8e-22 109.0 184 42.4
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 3.8e-22 109.0 174 41.4
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 3.8e-22 109.0 144 45.1
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 8.5e-22 107.8 177 40.7
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 8.5e-22 107.8 178 37.6
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 1.1e-21 107.5 181 41.4
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 1.4e-21 107.1 180 40.6
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 1.4e-21 107.1 178 39.3
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 5.5e-21 105.1 178 39.9
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 7.2e-21 104.8 176 39.8
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 9.4e-21 104.4 180 40.0
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 1.2e-20 104.0 179 38.5
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 2.1e-20 103.2 178 38.2
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 2.7e-20 102.8 169 39.6
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 6.1e-20 101.7 169 39.1
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 7.9e-20 101.3 179 38.5
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 1.0e-19 100.9 178 39.3
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 1.8e-19 100.1 178 37.6
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 6.7e-19 98.2 179 36.9
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 2.0e-18 96.7 179 36.9
Aqoxy3G03162 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 1.7e-17 93.6 175 36.6
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 1.7e-17 93.6 178 40.4
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.7e-17 93.6 184 38.0
CDE02G0477 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 2.8e-17 92.8 124 44.4
CDE11G0941 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 2.8e-17 92.8 115 45.2
ATR0049G082 Amborella trichopoda HOM05D006478 ORTHO05D008071 4.8e-17 92.0 127 44.1
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 6.3e-17 91.7 115 46.1
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 8.2e-17 91.3 179 36.3
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 8.2e-17 91.3 179 36.3
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 1.8e-16 90.1 85 58.8
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 1.5e-15 87.0 180 32.8
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 3.4e-15 85.9 185 37.8
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 4.5e-15 85.5 209 35.4
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 1.7e-14 83.6 175 36.6
Rhsim09G0192300 Rhododendron simsii HOM05D006478 ORTHO05D008071 9.4e-13 77.8 148 39.9
unitig_8.g3700 Utricularia gibba HOM05D006478 ORTHO05D008071 7.4e-10 68.2 150 34.0
Manes.03G110816 Manihot esculenta HOM05D006478 ORTHO05D008071 1.8e-08 63.5 47 63.8
Hund04605 Selenicereus undatus HOM05D006478 ORTHO05D008071 3.5e-07 59.3 135 33.3
Pp3c3_28350 Physcomitrium patens HOM05D006478 ORTHO05D008071 2.9e-06 56.2 171 31.6
RcHm_v2.0_Chr4g0409771 Rosa chinensis HOM05D006478 ORTHO05D008071 3.8e-06 55.8 119 33.6
Prupe.2G279400 Prunus persica HOM05D006478 ORTHO05D008071 8.5e-06 54.7 84 42.9


User provided reference genes

Program Settings