Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36549 Trifolium pratense HOM05D001656 ORTHO05D003489 1.5e-72 276.2 145 100.0
TPR.G12371 Trifolium pratense HOM05D001656 ORTHO05D003489 2.3e-57 225.7 121 96.7
Medtr3g110690 Medicago truncatula HOM05D001656 ORTHO05D003489 6.6e-41 171.0 109 83.5
Ca_15557_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 7.3e-40 167.5 105 83.8
Lj1g0003271 Lotus japonicus HOM05D001656 ORTHO05D003489 6.0e-34 147.9 109 70.6
TPR.G35403 Trifolium pratense HOM05D001656 ORTHO05D003489 3.7e-31 138.7 106 68.9
Glyma.17G191900 Glycine max HOM05D001656 ORTHO05D003489 1.8e-30 136.3 109 66.1
Medtr1g007420 Medicago truncatula HOM05D001656 ORTHO05D003489 3.1e-30 135.6 109 65.1
Ca_03352_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 5.3e-30 134.8 109 63.3
Glyma.06G090300 Glycine max HOM05D001656 ORTHO05D003489 1.5e-29 133.3 108 65.7
Glyma.04G088300 Glycine max HOM05D001656 ORTHO05D003489 3.4e-29 132.1 108 65.7
Phvul.001G063050 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 1.7e-28 129.8 109 61.5
CARHR010100 Cardamine hirsuta HOM05D001656 ORTHO05D003489 3.2e-27 125.6 120 55.8
Carub.0002s0620 Capsella rubella HOM05D001656 ORTHO05D003489 5.5e-27 124.8 119 53.8
TWI36G0018 Tripterygium wilfordii HOM05D001656 ORTHO05D003489 5.5e-27 124.8 106 63.2
BraA09t37464Z Brassica rapa HOM05D001656 ORTHO05D003489 2.1e-26 122.9 107 56.1
Sp2g05240 Schrenkiella parvula HOM05D001656 ORTHO05D003489 2.7e-26 122.5 119 51.3
Sp1g08640 Schrenkiella parvula HOM05D001656 ORTHO05D003489 3.5e-26 122.1 108 56.5
AL1G20690 Arabidopsis lyrata HOM05D001656 ORTHO05D003489 4.6e-26 121.7 120 55.0
A09p18330 Brassica napus HOM05D001656 ORTHO05D003489 4.6e-26 121.7 115 53.0
Phvul.009G113900 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 4.6e-26 121.7 108 61.1
Psat0s221g0120 Pisum sativum HOM05D001656 ORTHO05D003489 4.6e-26 121.7 80 80.0
AT1G09980 Arabidopsis thaliana HOM05D001656 ORTHO05D003489 7.9e-26 120.9 120 54.2
Sabra13G0090300 Salix brachista HOM05D001656 ORTHO05D003489 7.9e-26 120.9 113 55.8
Carub.0001s0941 Capsella rubella HOM05D001656 ORTHO05D003489 1.0e-25 120.6 109 57.8
VMungo1309G1010 Vigna mungo HOM05D001656 ORTHO05D003489 1.0e-25 120.6 108 62.0
BcaC05g24823 Brassica carinata HOM05D001656 ORTHO05D003489 1.3e-25 120.2 108 56.5
A09p65220 Brassica napus HOM05D001656 ORTHO05D003489 1.3e-25 120.2 120 53.3
Thhalv10006833m.g Eutrema salsugineum HOM05D001656 ORTHO05D003489 1.3e-25 120.2 119 51.3
AT1G58350 Arabidopsis thaliana HOM05D001656 ORTHO05D003489 1.8e-25 119.8 109 55.0
BcaC07g41848 Brassica carinata HOM05D001656 ORTHO05D003489 1.8e-25 119.8 120 53.3
C08p49170 Brassica napus HOM05D001656 ORTHO05D003489 1.8e-25 119.8 120 53.3
TWI56G0670 Tripterygium wilfordii HOM05D001656 ORTHO05D003489 1.8e-25 119.8 110 59.1
Cfa020712 Carpinus fangiana HOM05D001656 ORTHO05D003489 2.3e-25 119.4 110 59.1
COL.COLO4_35358 Corchorus olitorius HOM05D001656 ORTHO05D003489 3.9e-25 118.6 120 55.8
Manes.03G069648 Manihot esculenta HOM05D001656 ORTHO05D003489 3.9e-25 118.6 110 56.4
AL2G17870 Arabidopsis lyrata HOM05D001656 ORTHO05D003489 5.1e-25 118.2 109 54.1
Cpa.g.sc160.10 Carica papaya HOM05D001656 ORTHO05D003489 6.7e-25 117.9 122 51.6
MD08G1211000 Malus domestica HOM05D001656 ORTHO05D003489 6.7e-25 117.9 111 56.8
BcaC04g22145 Brassica carinata HOM05D001656 ORTHO05D003489 1.1e-24 117.1 119 50.4
PGR031G1306 Punica granatum HOM05D001656 ORTHO05D003489 1.1e-24 117.1 110 55.5
THA.LOC104816780 Tarenaya hassleriana HOM05D001656 ORTHO05D003489 1.5e-24 116.7 110 56.4
Thecc.08G080200 Theobroma cacao HOM05D001656 ORTHO05D003489 1.5e-24 116.7 110 56.4
Lalb_Chr11g0064671 Lupinus albus HOM05D001656 ORTHO05D003489 1.9e-24 116.3 109 58.7
Potri.013G104400 Populus trichocarpa HOM05D001656 ORTHO05D003489 1.9e-24 116.3 119 52.9
Prupe.1G542900 Prunus persica HOM05D001656 ORTHO05D003489 1.9e-24 116.3 110 56.4
Hma1.2p1_0442F.1_g153890 Hydrangea macrophylla HOM05D001656 ORTHO05D003489 2.5e-24 115.9 110 57.3
ClCG08G009120 Citrullus lanatus HOM05D001656 ORTHO05D003489 3.3e-24 115.5 120 55.0
Nn1g06077 Nelumbo nucifera HOM05D001656 ORTHO05D003489 3.3e-24 115.5 107 58.9
A06p06680 Brassica napus HOM05D001656 ORTHO05D003489 4.3e-24 115.2 120 52.5
BraA06t23882Z Brassica rapa HOM05D001656 ORTHO05D003489 4.3e-24 115.2 118 53.4
THA.LOC104820058 Tarenaya hassleriana HOM05D001656 ORTHO05D003489 4.3e-24 115.2 110 55.5
CANSAT25G1280 Cannabis sativa HOM05D001656 ORTHO05D003489 7.4e-24 114.4 109 55.0
FvH4_5g33540 Fragaria vesca HOM05D001656 ORTHO05D003489 7.4e-24 114.4 110 55.5
CiPaw.15G153400 Carya illinoinensis HOM05D001656 ORTHO05D003489 9.6e-24 114.0 110 55.5
TAR250G0002 Trochodendron aralioides HOM05D001656 ORTHO05D003489 9.6e-24 114.0 110 58.2
QL12p040546 Quercus lobata HOM05D001656 ORTHO05D003489 1.3e-23 113.6 106 60.4
Sabra19G0088800 Salix brachista HOM05D001656 ORTHO05D003489 1.3e-23 113.6 116 53.4
Sed0023766 Sechium edule HOM05D001656 ORTHO05D003489 1.3e-23 113.6 110 55.5
Haze_19017 Corylus avellana HOM05D001656 ORTHO05D003489 1.6e-23 113.2 103 59.2
Potri.019G077700 Populus trichocarpa HOM05D001656 ORTHO05D003489 3.7e-23 112.1 118 50.8
C05p08150 Brassica napus HOM05D001656 ORTHO05D003489 4.8e-23 111.7 120 50.8
CsaV3_6G036010 Cucumis sativus L. HOM05D001656 ORTHO05D003489 4.8e-23 111.7 110 55.5
SGA_v2.0_scaffold114G31863 Striga asiatica HOM05D001656 ORTHO05D003489 4.8e-23 111.7 117 53.0
vmacro14266 Vaccinium macrocarpon HOM05D001656 ORTHO05D003489 4.8e-23 111.7 110 56.4
Ciclev10000361m.g Citrus clementina HOM05D001656 ORTHO05D003489 6.2e-23 111.3 111 55.9
C09p22870 Brassica napus HOM05D001656 ORTHO05D003489 8.2e-23 110.9 118 49.2
BolC9t55207H Brassica oleracea HOM05D001656 ORTHO05D003489 8.2e-23 110.9 118 49.2
MELO3C026510.2 Cucumis melo HOM05D001656 ORTHO05D003489 8.2e-23 110.9 110 55.5
Gohir.A01G125100 Gossypium hirsutum HOM05D001656 ORTHO05D003489 8.2e-23 110.9 109 52.3
CSS0003613 Camellia sinensis var. sinensis HOM05D001656 ORTHO05D003489 1.1e-22 110.5 110 55.5
Duzib116G0138 Durio zibethinus HOM05D001656 ORTHO05D003489 1.1e-22 110.5 110 55.5
Aa31LG2G10790 Aethionema arabicum HOM05D001656 ORTHO05D003489 1.4e-22 110.2 100 58.0
BraA09t41867Z Brassica rapa HOM05D001656 ORTHO05D003489 1.4e-22 110.2 119 50.4
Eucgr.F02184 Eucalyptus grandis HOM05D001656 ORTHO05D003489 1.4e-22 110.2 108 54.6
Aqoxy6G00378 Aquilegia oxysepala HOM05D001656 ORTHO05D003489 1.8e-22 109.8 108 55.6
arahy.Tifrunner.gnm1.ann1.EW8P9I Arachis hypogaea HOM05D001656 ORTHO05D003489 1.8e-22 109.8 97 58.8
BolC8t52452H Brassica oleracea HOM05D001656 ORTHO05D003489 1.8e-22 109.8 119 50.4
Gohir.D01G112700 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.8e-22 109.8 109 51.4
MD15G1398300 Malus domestica HOM05D001656 ORTHO05D003489 1.8e-22 109.8 111 54.1
RcHm_v2.0_Chr7g0232361 Rosa chinensis HOM05D001656 ORTHO05D003489 1.8e-22 109.8 110 53.6
SalBow3G0204 Salvia bowleyana HOM05D001656 ORTHO05D003489 1.8e-22 109.8 106 57.5
PGSC0003DMG400024574 Solanum tuberosum HOM05D001656 ORTHO05D003489 2.4e-22 109.4 108 58.3
GSVIVG01029697001 Vitis vinifera HOM05D001656 ORTHO05D003489 4.0e-22 108.6 110 55.5
BolC5t29567H Brassica oleracea HOM05D001656 ORTHO05D003489 5.3e-22 108.2 119 50.4
Actinidia23982 Actinidia chinensis HOM05D001656 ORTHO05D003489 9.0e-22 107.5 110 54.5
Ah.07g204550 Amaranthus hybridus HOM05D001656 ORTHO05D003489 9.0e-22 107.5 108 54.6
Gorai.002G137500 Gossypium raimondii HOM05D001656 ORTHO05D003489 9.0e-22 107.5 109 50.5
Manes.05G186300 Manihot esculenta HOM05D001656 ORTHO05D003489 9.0e-22 107.5 111 55.0
Atru.chr13.918 Acer truncatum HOM05D001656 ORTHO05D003489 1.2e-21 107.1 110 52.7
Rhsim01G0193900 Rhododendron simsii HOM05D001656 ORTHO05D003489 1.2e-21 107.1 110 57.3
Migut.D01892 Erythranthe guttata HOM05D001656 ORTHO05D003489 2.0e-21 106.3 109 56.0
CAN.G853.38 Capsicum annuum HOM05D001656 ORTHO05D003489 2.6e-21 105.9 106 57.5
Lalb_Chr23g0269821 Lupinus albus HOM05D001656 ORTHO05D003489 2.6e-21 105.9 109 55.0
Manes.18G053500 Manihot esculenta HOM05D001656 ORTHO05D003489 2.6e-21 105.9 114 51.8
TAR625G1477 Trochodendron aralioides HOM05D001656 ORTHO05D003489 2.6e-21 105.9 124 49.2
Solyc03g113640.4 Solanum lycopersicum HOM05D001656 ORTHO05D003489 3.4e-21 105.5 110 56.4
Atru.chr6.982 Acer truncatum HOM05D001656 ORTHO05D003489 4.5e-21 105.1 121 50.4
Hund09724 Selenicereus undatus HOM05D001656 ORTHO05D003489 4.5e-21 105.1 139 51.1
Duzib093G0139 Durio zibethinus HOM05D001656 ORTHO05D003489 5.8e-21 104.8 108 51.9
Gohir.D05G217800 Gossypium hirsutum HOM05D001656 ORTHO05D003489 5.8e-21 104.8 110 52.7
Gohir.A05G214500 Gossypium hirsutum HOM05D001656 ORTHO05D003489 7.6e-21 104.4 110 52.7
Actinidia11666 Actinidia chinensis HOM05D001656 ORTHO05D003489 1.0e-20 104.0 110 53.6
Gorai.009G224600 Gossypium raimondii HOM05D001656 ORTHO05D003489 1.0e-20 104.0 110 52.7
Sopen03g032680 Solanum pennellii HOM05D001656 ORTHO05D003489 1.0e-20 104.0 110 55.5
EL10Ac3g05154 Beta vulgaris HOM05D001656 ORTHO05D003489 1.7e-20 103.2 108 53.7
Dinv18177 Davidia involucrata HOM05D001656 ORTHO05D003489 1.7e-20 103.2 113 53.1
Sc13g0010550 Simmondsia chinensis HOM05D001656 ORTHO05D003489 3.8e-20 102.1 108 52.8
Migut.I00076 Erythranthe guttata HOM05D001656 ORTHO05D003489 4.9e-20 101.7 111 55.9
DCAR_005504 Daucus carota HOM05D001656 ORTHO05D003489 8.4e-20 100.9 113 49.6
ECA248G3915 Erigeron canadensis HOM05D001656 ORTHO05D003489 1.1e-19 100.5 108 53.7
PSO675G3868 Papaver somniferum HOM05D001656 ORTHO05D003489 1.1e-19 100.5 110 54.5
FAN04G0452 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.4e-19 100.1 109 50.5
MBI17_g13522_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D003489 2.5e-19 99.4 111 51.4
Nn5g28753 Nelumbo nucifera HOM05D001656 ORTHO05D003489 2.5e-19 99.4 109 52.3
arahy.Tifrunner.gnm1.ann1.MCUW0T Arachis hypogaea HOM05D001656 ORTHO05D003489 3.2e-19 99.0 92 55.4
PSO541G1368 Papaver somniferum HOM05D001656 ORTHO05D003489 5.5e-19 98.2 110 53.6
Glyma.08G077100 Glycine max HOM05D001656 ORTHO05D003489 7.1e-19 97.8 108 50.9
Gohir.D06G027300 Gossypium hirsutum HOM05D001656 ORTHO05D003489 9.3e-19 97.4 110 48.2
Psat7g095680 Pisum sativum HOM05D001656 ORTHO05D003489 9.3e-19 97.4 123 45.5
Ciclev10000310m.g Citrus clementina HOM05D001656 ORTHO05D003489 1.2e-18 97.1 110 50.0
Cc04_g16130 Coffea canephora HOM05D001656 ORTHO05D003489 1.2e-18 97.1 110 51.8
Glyma.08G183400 Glycine max HOM05D001656 ORTHO05D003489 1.2e-18 97.1 108 50.0
HanXRQChr11g0344231 Helianthus annuus HOM05D001656 ORTHO05D003489 1.6e-18 96.7 108 50.0
Lj6g0015393 Lotus japonicus HOM05D001656 ORTHO05D003489 1.6e-18 96.7 115 49.6
Aa31LG1G4900 Aethionema arabicum HOM05D001656 ORTHO05D003489 2.1e-18 96.3 107 46.7
Medtr4g094378 Medicago truncatula HOM05D001656 ORTHO05D003489 2.1e-18 96.3 122 44.3
Cpa.g.sc2.37 Carica papaya HOM05D001656 ORTHO05D003489 3.5e-18 95.5 112 46.4
Gorai.010G030400 Gossypium raimondii HOM05D001656 ORTHO05D003489 3.5e-18 95.5 110 48.2
Ca_18321_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 4.6e-18 95.1 111 50.5
Lju124C19T4 Lonicera japonica HOM05D001656 ORTHO05D003489 6.0e-18 94.7 113 51.3
Nitab4.5_0002875g0070 Nicotiana tabacum HOM05D001656 ORTHO05D003489 6.0e-18 94.7 98 57.1
VMungo0540G0892 Vigna mungo HOM05D001656 ORTHO05D003489 6.0e-18 94.7 108 48.1
Gohir.A06G028401 Gossypium hirsutum HOM05D001656 ORTHO05D003489 7.9e-18 94.4 110 47.3
HPP92_009299 Vanilla planifolia HOM05D001656 ORTHO05D003489 7.9e-18 94.4 110 51.8
CSS0033770 Camellia sinensis var. sinensis HOM05D001656 ORTHO05D003489 1.0e-17 94.0 109 49.5
SalBow5G0425 Salvia bowleyana HOM05D001656 ORTHO05D003489 1.0e-17 94.0 106 49.1
Gohir.A06G028500 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.8e-17 93.2 110 47.3
Peaxi162Scf00017g02238 Petunia axillaris HOM05D001656 ORTHO05D003489 1.8e-17 93.2 98 55.1
Gohir.D06G026800 Gossypium hirsutum HOM05D001656 ORTHO05D003489 3.9e-17 92.0 127 40.9
TPR.G23822 Trifolium pratense HOM05D001656 ORTHO05D003489 3.9e-17 92.0 126 45.2
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 5.1e-17 91.7 79 57.0
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 5.1e-17 91.7 79 57.0
AUR62028100 Chenopodium quinoa HOM05D001656 ORTHO05D003489 6.7e-17 91.3 110 50.9
Lj4g0026988 Lotus japonicus HOM05D001656 ORTHO05D003489 8.7e-17 90.9 110 49.1
Nitab4.5_0020568g0010 Nicotiana tabacum HOM05D001656 ORTHO05D003489 1.1e-16 90.5 98 54.1
Phvul.006G210700 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 1.1e-16 90.5 103 50.5
MSTRG.4393 Avicennia marina HOM05D001656 ORTHO05D003489 1.5e-16 90.1 110 49.1
AUR62005970 Chenopodium quinoa HOM05D001656 ORTHO05D003489 1.9e-16 89.7 108 49.1
Glyma.15G049300 Glycine max HOM05D001656 ORTHO05D003489 3.3e-16 89.0 108 47.2
Lsat_1_v5_gn_1_69641 Lactuca sativa HOM05D001656 ORTHO05D003489 3.3e-16 89.0 108 50.0
CDE06G2450 Ceratophyllum demersum HOM05D001656 ORTHO05D003489 5.7e-16 88.2 119 49.6
Oeu041590.1 Olea europaea HOM05D001656 ORTHO05D003489 1.3e-15 87.0 84 57.1
Ca_00099_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 2.2e-15 86.3 109 46.8
Phvul.002G204000 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 8.2e-15 84.3 108 46.3
Lalb_Chr18g0060791 Lupinus albus HOM05D001656 ORTHO05D003489 1.2e-13 80.5 119 42.9
Gohir.D06G025900 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.5e-13 80.1 85 48.2
unitig_744.g24393 Utricularia gibba HOM05D001656 ORTHO05D003489 2.6e-13 79.3 90 46.7
ATR0820G193 Amborella trichopoda HOM05D001656 ORTHO05D003489 1.7e-12 76.6 124 41.1
arahy.Tifrunner.gnm1.ann1.G0H17A Arachis hypogaea HOM05D001656 ORTHO05D003489 2.2e-12 76.3 61 65.6
VMungo0251G2951 Vigna mungo HOM05D001656 ORTHO05D003489 2.9e-12 75.9 108 43.5
Zm00001eb139410 Zea mays HOM05D001656 ORTHO05D003489 3.8e-12 75.5 106 42.5
Zm00001eb407660 Zea mays HOM05D001656 ORTHO05D003489 5.0e-12 75.1 109 41.3
arahy.Tifrunner.gnm1.ann1.0H8WKK Arachis hypogaea HOM05D001656 ORTHO05D003489 2.1e-10 69.7 74 50.0
arahy.Tifrunner.gnm1.ann1.AB9876 Arachis hypogaea HOM05D001656 ORTHO05D003489 2.1e-10 69.7 74 50.0
Lalb_Chr07g0189321 Lupinus albus HOM05D001656 ORTHO05D003489 2.1e-10 69.7 135 37.8
Lju124C19G14 Lonicera japonica HOM05D001656 ORTHO05D003489 4.6e-10 68.6 95 45.3
SEGI_30798 Sequoiadendron giganteum HOM05D001656 ORTHO05D003489 1.4e-09 67.0 117 38.5
Zm00001eb202450 Zea mays HOM05D001656 ORTHO05D003489 1.8e-09 66.6 118 39.0
ECA238G2565 Erigeron canadensis HOM05D001656 ORTHO05D003489 3.3e-08 62.4 82 41.5


User provided reference genes

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