Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 4.4e-62 241.1 121 100.0
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 1.6e-59 232.6 118 96.6
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 2.2e-58 228.8 119 91.6
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 1.2e-56 223.0 120 90.8
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 2.3e-55 218.8 116 89.7
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 3.0e-55 218.4 117 88.0
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 5.2e-55 217.6 116 88.8
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 5.2e-55 217.6 116 87.9
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 6.7e-55 217.2 116 88.8
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 6.7e-55 217.2 116 88.8
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 8.8e-55 216.9 116 87.1
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 8.8e-55 216.9 116 87.1
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 8.8e-55 216.9 116 89.7
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 1.2e-54 216.5 116 89.7
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 1.2e-54 216.5 116 86.2
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 1.2e-54 216.5 116 87.9
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 1.5e-54 216.1 116 87.1
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 1.5e-54 216.1 116 87.1
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 2.0e-54 215.7 116 87.9
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 2.0e-54 215.7 116 87.9
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 2.0e-54 215.7 116 87.1
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 2.0e-54 215.7 116 87.1
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 2.0e-54 215.7 116 87.1
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 2.0e-54 215.7 119 85.7
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 2.0e-54 215.7 116 87.1
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 2.6e-54 215.3 116 88.8
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 2.6e-54 215.3 116 87.1
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 2.6e-54 215.3 116 86.2
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 5.7e-54 214.2 116 87.1
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 7.5e-54 213.8 115 88.7
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 7.5e-54 213.8 116 85.3
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 7.5e-54 213.8 116 84.5
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 7.5e-54 213.8 117 84.6
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 9.7e-54 213.4 114 86.8
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 9.7e-54 213.4 120 83.3
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 9.7e-54 213.4 115 86.1
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 9.7e-54 213.4 115 86.1
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 1.3e-53 213.0 117 86.3
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 1.3e-53 213.0 118 85.6
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 1.7e-53 212.6 116 84.5
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 1.7e-53 212.6 115 87.0
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 1.7e-53 212.6 116 84.5
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 2.2e-53 212.2 115 87.0
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 2.2e-53 212.2 116 85.3
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 2.8e-53 211.8 115 87.8
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 2.8e-53 211.8 116 85.3
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 2.8e-53 211.8 115 86.1
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 3.7e-53 211.5 115 87.0
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 3.7e-53 211.5 119 84.0
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 3.7e-53 211.5 119 84.0
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 3.7e-53 211.5 118 84.7
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 3.7e-53 211.5 118 84.7
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 3.7e-53 211.5 118 84.7
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 4.8e-53 211.1 117 85.5
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 6.3e-53 210.7 113 88.5
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 8.2e-53 210.3 119 83.2
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 8.2e-53 210.3 119 83.2
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 8.2e-53 210.3 119 83.2
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 8.2e-53 210.3 115 85.2
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 8.2e-53 210.3 119 83.2
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 1.4e-52 209.5 116 85.3
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 1.4e-52 209.5 116 83.6
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 1.4e-52 209.5 116 84.5
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 1.8e-52 209.1 112 88.4
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 2.4e-52 208.8 116 83.6
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 2.4e-52 208.8 115 84.3
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 2.4e-52 208.8 115 84.3
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 2.4e-52 208.8 116 83.6
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 3.1e-52 208.4 116 83.6
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 3.1e-52 208.4 116 83.6
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 3.1e-52 208.4 120 80.8
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 3.1e-52 208.4 115 85.2
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 4.1e-52 208.0 120 80.8
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 5.3e-52 207.6 116 82.8
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 7.0e-52 207.2 116 81.9
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 7.0e-52 207.2 120 80.0
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 7.0e-52 207.2 120 80.0
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 7.0e-52 207.2 116 81.0
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 7.0e-52 207.2 116 81.0
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 9.1e-52 206.8 120 80.0
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 9.1e-52 206.8 120 80.0
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 9.1e-52 206.8 116 82.8
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 1.6e-51 206.1 117 82.1
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 4.5e-51 204.5 119 80.7
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 4.5e-51 204.5 112 83.0
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 4.5e-51 204.5 112 83.0
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 5.9e-51 204.1 118 82.2
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 1.0e-50 203.4 120 76.7
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 1.0e-50 203.4 120 81.7
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 1.3e-50 203.0 118 81.4
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 2.2e-50 202.2 116 84.5
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 2.9e-50 201.8 120 75.8
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 4.2e-49 198.0 117 79.5
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 8.0e-48 193.7 119 73.1
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 3.0e-47 191.8 108 84.3
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 5.2e-47 191.0 118 73.7
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 5.2e-47 191.0 119 72.3
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 6.3e-45 184.1 108 78.7
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 1.1e-44 183.3 112 77.7
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 2.4e-44 182.2 112 75.0
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 5.4e-44 181.0 114 78.1
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 2.0e-43 179.1 107 79.4
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 5.9e-43 177.6 118 71.2
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 1.0e-42 176.8 111 70.3
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 2.5e-41 172.2 120 70.8
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 4.4e-38 161.4 119 62.2
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 3.0e-31 138.7 116 61.2
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 5.7e-30 134.4 116 61.2
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 2.0e-22 109.4 116 42.2
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 7.0e-20 100.9 112 42.9
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 8.1e-16 87.4 107 41.1
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 5.2e-15 84.7 45 84.4
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 5.8e-14 81.3 109 32.1


User provided reference genes

Program Settings