Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8QPJ7C Arachis hypogaea HOM05D002544 ORTHO05D007277 2.5e-15 84.3 45 100.0
arahy.Tifrunner.gnm1.ann1.N8969K Arachis hypogaea HOM05D002544 ORTHO05D007277 2.5e-15 84.3 45 100.0
Ca_26386_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007277 2.5e-15 84.3 45 100.0
LjContig00141g0018139 Lotus japonicus HOM05D002544 ORTHO05D007277 2.5e-15 84.3 45 100.0
Lalb_Chr04g0251431 Lupinus albus HOM05D002544 ORTHO05D007277 2.5e-15 84.3 45 100.0
Medtr5g077840 Medicago truncatula HOM05D002544 ORTHO05D007277 2.5e-15 84.3 45 100.0
Phvul.008G237900 Phaseolus vulgaris HOM05D002544 ORTHO05D007277 2.5e-15 84.3 45 100.0
TPR.G36471 Trifolium pratense HOM05D002544 ORTHO05D007277 2.5e-15 84.3 45 100.0
TPR.G36488 Trifolium pratense HOM05D002544 ORTHO05D007277 2.5e-15 84.3 45 100.0
Actinidia17195 Actinidia chinensis HOM05D002544 ORTHO05D007277 3.3e-15 84.0 45 97.8
CAN.G733.10 Capsicum annuum HOM05D002544 ORTHO05D007277 3.3e-15 84.0 45 97.8
Cc07_g13180 Coffea canephora HOM05D002544 ORTHO05D007277 3.3e-15 84.0 45 97.8
ECA240G4132 Erigeron canadensis HOM05D002544 ORTHO05D004529 3.3e-15 84.0 45 97.8
Gorai.007G187700 Gossypium raimondii HOM05D002544 ORTHO05D007277 3.3e-15 84.0 45 97.8
HanXRQChr16g0532851 Helianthus annuus HOM05D002544 ORTHO05D007277 3.3e-15 84.0 45 97.8
Solyc05g051230.4 Solanum lycopersicum HOM05D002544 ORTHO05D007277 3.3e-15 84.0 45 97.8
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 3.3e-15 84.0 45 97.8
GSVIVG01015995001 Vitis vinifera HOM05D002544 ORTHO05D007277 3.3e-15 84.0 45 97.8
Atru.chr1.2027 Acer truncatum HOM05D002544 ORTHO05D007277 5.7e-15 83.2 45 95.6
arahy.Tifrunner.gnm1.ann1.Y37JRT Arachis hypogaea HOM05D002544 ORTHO05D007277 5.7e-15 83.2 45 97.8
ClCG05G002460 Citrullus lanatus HOM05D002544 ORTHO05D007277 5.7e-15 83.2 45 97.8
Eucgr.F02880 Eucalyptus grandis HOM05D002544 ORTHO05D007277 5.7e-15 83.2 45 97.8
Glyma.02G243700 Glycine max HOM05D002544 ORTHO05D007277 5.7e-15 83.2 45 97.8
Glyma.14G212800 Glycine max HOM05D002544 ORTHO05D007277 5.7e-15 83.2 45 97.8
Sc04g0005090 Simmondsia chinensis HOM05D002544 ORTHO05D007277 5.7e-15 83.2 45 97.8
VMungo0647G0515 Vigna mungo HOM05D002544 ORTHO05D007277 5.7e-15 83.2 45 97.8
Haze_14287 Corylus avellana HOM05D002544 ORTHO05D007277 7.4e-15 82.8 45 95.6
Duzib138G1710 Durio zibethinus HOM05D002544 ORTHO05D007277 7.4e-15 82.8 45 95.6
Gohir.A11G168900 Gossypium hirsutum HOM05D002544 ORTHO05D007277 7.4e-15 82.8 45 95.6
Nitab4.5_0010055g0010 Nicotiana tabacum HOM05D002544 ORTHO05D007277 7.4e-15 82.8 45 95.6
Peaxi162Scf00424g00516 Petunia axillaris HOM05D002544 ORTHO05D007277 7.4e-15 82.8 45 95.6
Potri.004G083200 Populus trichocarpa HOM05D002544 ORTHO05D007277 7.4e-15 82.8 45 95.6
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 7.4e-15 82.8 45 95.6
SalBow5G3645 Salvia bowleyana HOM05D002544 ORTHO05D007277 7.4e-15 82.8 45 95.6
Hund02530 Selenicereus undatus HOM05D002544 ORTHO05D007277 7.4e-15 82.8 45 95.6
Sopen05g029600 Solanum pennellii HOM05D002544 ORTHO05D007277 7.4e-15 82.8 45 95.6
PGSC0003DMG401014608 Solanum tuberosum HOM05D002544 ORTHO05D007277 7.4e-15 82.8 45 95.6
Thecc.04G063800 Theobroma cacao HOM05D002544 ORTHO05D007277 7.4e-15 82.8 45 95.6
Hma1.2p1_1214F.1_g267540 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 9.6e-15 82.4 45 93.3
Hma1.2p1_1443F.1_g283880 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 9.6e-15 82.4 45 93.3
Hma1.2p1_1443F.1_g283890 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 9.6e-15 82.4 45 93.3
PGR004G1667 Punica granatum HOM05D002544 ORTHO05D007277 9.6e-15 82.4 45 95.6
FAN26G0021 Fragaria x ananassa HOM05D002544 ORTHO05D007277 1.3e-14 82.0 45 95.6
Gohir.D11G175100 Gossypium hirsutum HOM05D002544 ORTHO05D007277 1.3e-14 82.0 45 95.6
Lsat_1_v5_gn_3_64121 Lactuca sativa HOM05D002544 ORTHO05D007277 1.3e-14 82.0 45 95.6
Manes.17G002000 Manihot esculenta HOM05D002544 ORTHO05D007277 1.3e-14 82.0 45 95.6
Prupe.3G165000 Prunus persica HOM05D002544 ORTHO05D007277 1.3e-14 82.0 45 95.6
RcHm_v2.0_Chr3g0492321 Rosa chinensis HOM05D002544 ORTHO05D007277 1.3e-14 82.0 45 95.6
Aqoxy3G04065 Aquilegia oxysepala HOM05D002544 ORTHO05D007277 1.6e-14 81.6 45 95.6
CSS0009784 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007277 1.6e-14 81.6 45 93.3
CSS0024967 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007277 1.6e-14 81.6 45 93.3
Cpa.g.sc116.80 Carica papaya HOM05D002544 ORTHO05D007277 1.6e-14 81.6 45 95.6
CiPaw.03G074400 Carya illinoinensis HOM05D002544 ORTHO05D007277 1.6e-14 81.6 45 93.3
MELO3C006210.2 Cucumis melo HOM05D002544 ORTHO05D007277 1.6e-14 81.6 45 93.3
Lj2C517G4 Lonicera japonica HOM05D002544 ORTHO05D007277 1.6e-14 81.6 45 93.3
MBI13_g24910_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007277 1.6e-14 81.6 45 93.3
QL02p059524 Quercus lobata HOM05D002544 ORTHO05D007277 1.6e-14 81.6 45 93.3
QL03p020238 Quercus lobata HOM05D002544 ORTHO05D007277 1.6e-14 81.6 45 93.3
Sed0005203 Sechium edule HOM05D002544 ORTHO05D007277 1.6e-14 81.6 45 93.3
Ah.11g047270 Amaranthus hybridus HOM05D002544 ORTHO05D007277 2.1e-14 81.3 45 93.3
Nitab4.5_0000777g0030 Nicotiana tabacum HOM05D002544 ORTHO05D007277 2.1e-14 81.3 45 93.3
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 2.1e-14 81.3 45 91.1
Ciclev10003868m.g Citrus clementina HOM05D002544 ORTHO05D007277 2.8e-14 80.9 45 93.3
MD09G1267400 Malus domestica HOM05D002544 ORTHO05D007277 2.8e-14 80.9 45 93.3
EL10Ac5g11231 Beta vulgaris HOM05D002544 ORTHO05D007277 3.7e-14 80.5 45 93.3
COL.COLO4_11381 Corchorus olitorius HOM05D002544 ORTHO05D007277 3.7e-14 80.5 45 93.3
THA.LOC104823837 Tarenaya hassleriana HOM05D002544 ORTHO05D007277 3.7e-14 80.5 45 93.3
MSTRG.15655 Avicennia marina HOM05D002544 ORTHO05D007277 4.8e-14 80.1 45 91.1
FAN19G1253 Fragaria x ananassa HOM05D002544 ORTHO05D007277 4.8e-14 80.1 45 93.3
TWI74G0587 Tripterygium wilfordii HOM05D002544 ORTHO05D007277 4.8e-14 80.1 45 95.6
unitig_32.g10720 Utricularia gibba HOM05D002544 ORTHO05D007277 4.8e-14 80.1 45 93.3
arahy.Tifrunner.gnm1.ann1.F4VH9C Arachis hypogaea HOM05D002544 ORTHO05D007277 6.2e-14 79.7 42 100.0
Migut.K00934 Erythranthe guttata HOM05D002544 ORTHO05D007277 6.2e-14 79.7 45 91.1
FvH4_1g29991 Fragaria vesca HOM05D002544 ORTHO05D007277 6.2e-14 79.7 45 91.1
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 8.2e-14 79.3 45 93.3
DCAR_010067 Daucus carota HOM05D002544 ORTHO05D007277 8.2e-14 79.3 45 88.9
Zm00001eb280220 Zea mays HOM05D002544 ORTHO05D007277 1.1e-13 79.0 45 91.1
BcaB06g27087 Brassica carinata HOM05D002544 ORTHO05D007277 2.4e-13 77.8 45 91.1
A04p10670 Brassica napus HOM05D002544 ORTHO05D007277 2.4e-13 77.8 45 91.1
C04p44390 Brassica napus HOM05D002544 ORTHO05D007277 2.4e-13 77.8 45 91.1
BraA04t16734Z Brassica rapa HOM05D002544 ORTHO05D007277 2.4e-13 77.8 45 91.1
CARHR215380 Cardamine hirsuta HOM05D002544 ORTHO05D007277 2.4e-13 77.8 45 91.1
Sp7g04620 Schrenkiella parvula HOM05D002544 ORTHO05D007277 2.4e-13 77.8 45 91.1
Pp3c14_20390 Physcomitrium patens HOM05D002544 ORTHO05D007277 3.1e-13 77.4 45 88.9
AL7G46290 Arabidopsis lyrata HOM05D002544 ORTHO05D007277 4.1e-13 77.0 45 88.9
AT5G37530 Arabidopsis thaliana HOM05D002544 ORTHO05D007277 4.1e-13 77.0 45 88.9
Thhalv10027822m.g Eutrema salsugineum HOM05D002544 ORTHO05D007277 4.1e-13 77.0 45 91.1
PSO063G7385 Papaver somniferum HOM05D002544 ORTHO05D007277 4.1e-13 77.0 45 91.1
PSO421G0270 Papaver somniferum HOM05D002544 ORTHO05D007277 4.1e-13 77.0 45 91.1
Aa31LG9G17540 Aethionema arabicum HOM05D002544 ORTHO05D007277 5.3e-13 76.6 45 88.9
BcaC02g09580 Brassica carinata HOM05D002544 ORTHO05D007277 5.3e-13 76.6 45 88.9
BolC4t26010H Brassica oleracea HOM05D002544 ORTHO05D007277 5.3e-13 76.6 45 88.9
Carub.0007s3270 Capsella rubella HOM05D002544 ORTHO05D007277 1.5e-12 75.1 45 86.7
SEGI_40484 Sequoiadendron giganteum HOM05D002544 ORTHO05D007277 2.0e-12 74.7 45 88.9
SHI30127 Sapria himalayana HOM05D002544 ORTHO05D007277 5.8e-12 73.2 45 82.2
HPP92_021315 Vanilla planifolia HOM05D002544 ORTHO05D007277 7.6e-12 72.8 45 86.7
Mapoly0047s0092 Marchantia polymorpha HOM05D002544 ORTHO05D007277 1.3e-11 72.0 45 84.4
AagrBONN_evm.TU.Sc2ySwM_228.346 Anthoceros agrestis HOM05D002544 ORTHO05D007277 2.9e-11 70.9 45 82.2
COL.COLO4_33783 Corchorus olitorius HOM05D002544 ORTHO05D007277 2.9e-11 70.9 45 82.2
FAN28G1946 Fragaria x ananassa HOM05D002544 ORTHO05D007277 3.8e-11 70.5 45 86.7
ATR0021G008 Amborella trichopoda HOM05D002544 ORTHO05D007277 5.0e-11 70.1 45 82.2
CDE05G0883 Ceratophyllum demersum HOM05D002544 ORTHO05D007277 6.5e-11 69.7 45 77.8
SMO367G0951 Selaginella moellendorffii HOM05D002544 ORTHO05D007277 3.9e-08 60.5 45 68.9
AUR62032172 Chenopodium quinoa HOM05D002544 ORTHO05D007277 1.9e-07 58.2 31 96.8
Cre03.g159400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007277 2.5e-07 57.8 45 64.4
SGA_v2.0_scaffold221G42687 Striga asiatica HOM05D000783 ORTHO05D007277 7.4e-07 56.2 41 65.9
MCO01G178 Micromonas commoda HOM05D002544 ORTHO05D007277 1.3e-06 55.5 45 60.0
PRCOL_00003184 Prasinoderma coloniale HOM05D002544 ORTHO05D007277 6.3e-06 53.1 45 55.6


User provided reference genes

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