Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36417 Trifolium pratense HOM05D000979 ORTHO05D037794 1.0e-27 125.9 62 100.0
TPR.G25719 Trifolium pratense HOM05D000979 ORTHO05D037794 2.5e-21 104.8 52 98.1
TPR.G26655 Trifolium pratense HOM05D000979 ORTHO05D001811 7.3e-21 103.2 52 96.2
Psat1g190520 Pisum sativum HOM05D000979 ORTHO05D001811 1.7e-17 92.0 52 84.6
Medtr2g019520 Medicago truncatula HOM05D000979 ORTHO05D001811 2.9e-17 91.3 52 84.6
Ca_00546_v3 Cicer arietinum L. HOM05D000979 ORTHO05D001811 1.4e-16 89.0 52 82.7
arahy.Tifrunner.gnm1.ann1.D6AVJJ Arachis hypogaea HOM05D000979 ORTHO05D001811 6.0e-15 83.6 52 80.8
arahy.Tifrunner.gnm1.ann1.ZU426T Arachis hypogaea HOM05D000979 ORTHO05D001811 6.0e-15 83.6 52 80.8
Lj6g0003739 Lotus japonicus HOM05D000979 ORTHO05D001811 3.3e-13 77.8 51 76.5
VMungo0540G2252 Vigna mungo HOM05D000979 ORTHO05D001811 1.4e-11 72.4 52 67.3
Glyma.13G217900 Glycine max HOM05D000979 ORTHO05D001811 4.0e-11 70.9 52 69.2
Phvul.006G164400 Phaseolus vulgaris HOM05D000979 ORTHO05D001811 5.2e-11 70.5 52 65.4
Glyma.15G094500 Glycine max HOM05D000979 ORTHO05D001811 2.6e-10 68.2 52 69.2
Lalb_Chr15g0086861 Lupinus albus HOM05D000979 ORTHO05D001811 4.4e-10 67.4 52 67.3
Thecc.06G151300 Theobroma cacao HOM05D000979 ORTHO05D001811 5.8e-10 67.0 41 70.7
Manes.15G120800 Manihot esculenta HOM05D000979 ORTHO05D001811 7.5e-10 66.6 45 62.2
Potri.004G132300 Populus trichocarpa HOM05D000979 ORTHO05D001811 1.7e-09 65.5 48 62.5
Sed0015949 Sechium edule HOM05D000979 ORTHO05D001811 1.7e-09 65.5 52 57.7
Migut.M00912 Erythranthe guttata HOM05D000979 ORTHO05D001811 2.9e-09 64.7 40 72.5
Prupe.4G080100 Prunus persica HOM05D000979 ORTHO05D001811 4.9e-09 63.9 50 64.0
Actinidia07692 Actinidia chinensis HOM05D000979 ORTHO05D001811 6.4e-09 63.5 50 68.0
Ciclev10014607m.g Citrus clementina HOM05D000979 ORTHO05D001811 1.1e-08 62.8 40 72.5
Haze_05588 Corylus avellana HOM05D000979 ORTHO05D001811 1.4e-08 62.4 51 60.8
Actinidia39570 Actinidia chinensis HOM05D000979 ORTHO05D001811 2.4e-08 61.6 50 64.0
CSS0007812 Camellia sinensis var. sinensis HOM05D000979 ORTHO05D001811 2.4e-08 61.6 50 58.0
Manes.17G069200 Manihot esculenta HOM05D000979 ORTHO05D001811 2.4e-08 61.6 41 65.9
CSS0007681 Camellia sinensis var. sinensis HOM05D000979 ORTHO05D001811 3.2e-08 61.2 50 62.0
Gohir.A05G148500 Gossypium hirsutum HOM05D000979 ORTHO05D001811 3.2e-08 61.2 40 67.5
MD05G1284300 Malus domestica HOM05D000979 ORTHO05D001811 3.2e-08 61.2 40 70.0
MELO3C007137.2 Cucumis melo HOM05D000979 ORTHO05D001811 4.1e-08 60.8 43 62.8
Gohir.D05G151000 Gossypium hirsutum HOM05D000979 ORTHO05D001811 4.1e-08 60.8 40 67.5
Gorai.009G155100 Gossypium raimondii HOM05D000979 ORTHO05D001811 4.1e-08 60.8 40 67.5
MD10G1262700 Malus domestica HOM05D000979 ORTHO05D001811 4.1e-08 60.8 40 70.0
GSVIVG01021447001 Vitis vinifera HOM05D000979 ORTHO05D037794 4.1e-08 60.8 40 70.0
CSS0014095 Camellia sinensis var. sinensis HOM05D000979 ORTHO05D001811 5.4e-08 60.5 49 57.1
CSS0023139 Camellia sinensis var. sinensis HOM05D000979 ORTHO05D001811 5.4e-08 60.5 49 57.1
PGR083G0321 Punica granatum HOM05D000979 ORTHO05D001811 5.4e-08 60.5 40 65.0
QL05p058336 Quercus lobata HOM05D000979 ORTHO05D001811 7.1e-08 60.1 49 61.2
TAR627G0536 Trochodendron aralioides HOM05D000979 ORTHO05D001811 7.1e-08 60.1 49 59.2
CsaV3_6G051700 Cucumis sativus L. HOM05D000979 ORTHO05D001811 1.2e-07 59.3 43 62.8
SalBow8G3442 Salvia bowleyana HOM05D000979 ORTHO05D001811 1.2e-07 59.3 40 62.5
RcHm_v2.0_Chr5g0014001 Rosa chinensis HOM05D000979 ORTHO05D001811 1.6e-07 58.9 47 57.4
Duzib235G1132 Durio zibethinus HOM05D000979 ORTHO05D001811 2.1e-07 58.5 39 66.7
SGA_v2.0_scaffold1G00169 Striga asiatica HOM05D000979 ORTHO05D001811 2.1e-07 58.5 39 61.5
Gohir.D06G204500 Gossypium hirsutum HOM05D000979 ORTHO05D001811 2.7e-07 58.2 40 65.0
Gorai.010G238600 Gossypium raimondii HOM05D000979 ORTHO05D001811 2.7e-07 58.2 40 65.0
Lsat_1_v5_gn_7_27241 Lactuca sativa HOM05D000979 ORTHO05D001811 2.7e-07 58.2 40 57.5
Sed0018569 Sechium edule HOM05D000979 ORTHO05D001811 3.5e-07 57.8 51 54.9
BcaC01g00148 Brassica carinata HOM05D000979 ORTHO05D001811 4.6e-07 57.4 46 60.9
CANSAT35G1475 Cannabis sativa HOM05D000979 ORTHO05D001811 4.6e-07 57.4 42 61.9
CiPaw.09G124200 Carya illinoinensis HOM05D000979 ORTHO05D001811 4.6e-07 57.4 52 51.9
Duzib192G0962 Durio zibethinus HOM05D000979 ORTHO05D001811 4.6e-07 57.4 40 62.5
Ah.09g232600 Amaranthus hybridus HOM05D000979 ORTHO05D001811 6.0e-07 57.0 50 54.0
Dinv32259 Davidia involucrata HOM05D000979 ORTHO05D001811 6.0e-07 57.0 40 65.0
ClCG01G024580 Citrullus lanatus HOM05D000979 ORTHO05D001811 7.8e-07 56.6 50 54.0
Dinv30740 Davidia involucrata HOM05D000979 ORTHO05D001811 7.8e-07 56.6 40 67.5
MSTRG.7484 Avicennia marina HOM05D000979 ORTHO05D001811 1.3e-06 55.8 40 62.5
DCAR_007892 Daucus carota HOM05D000979 ORTHO05D001811 1.3e-06 55.8 40 57.5
THA.LOC104812670 Tarenaya hassleriana HOM05D000979 ORTHO05D001811 1.3e-06 55.8 39 66.7
C03p76300 Brassica napus HOM05D000979 ORTHO05D001811 1.7e-06 55.5 43 65.1
Lj2A306G66 Lonicera japonica HOM05D000979 ORTHO05D001811 1.7e-06 55.5 50 60.0
Rhsim02G0157100 Rhododendron simsii HOM05D000979 ORTHO05D001811 1.7e-06 55.5 41 65.9
Cc00_g08430 Coffea canephora HOM05D000979 ORTHO05D001811 2.3e-06 55.1 50 54.0
HanXRQChr15g0481961 Helianthus annuus HOM05D000979 ORTHO05D001811 2.3e-06 55.1 40 57.5
Peaxi162Scf00468g00724 Petunia axillaris HOM05D000979 ORTHO05D001811 2.3e-06 55.1 42 57.1
A08p24770 Brassica napus HOM05D000979 ORTHO05D001811 3.0e-06 54.7 39 69.2
BraA08t34431Z Brassica rapa HOM05D000979 ORTHO05D001811 3.0e-06 54.7 39 69.2
ECA236G2602 Erigeron canadensis HOM05D000979 ORTHO05D001811 3.0e-06 54.7 41 56.1
Nn3g20760 Nelumbo nucifera HOM05D000979 ORTHO05D001811 3.0e-06 54.7 40 60.0
CAN.G702.40 Capsicum annuum HOM05D000979 ORTHO05D001811 5.1e-06 53.9 40 57.5
Sc05g0006230 Simmondsia chinensis HOM05D000979 ORTHO05D001811 8.6e-06 53.1 42 52.4


User provided reference genes

Program Settings