Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3634 Trifolium pratense HOM05D000184 ORTHO05D000032 1.3e-131 473.0 234 100.0
Medtr6g444980 Medicago truncatula HOM05D000184 ORTHO05D000032 4.7e-113 411.4 233 89.3
Psat1g015520 Pisum sativum HOM05D000184 ORTHO05D000032 1.2e-108 396.7 236 87.3
Ca_03181_v3 Cicer arietinum L. HOM05D000184 ORTHO05D000032 1.1e-96 357.1 234 83.8
Lalb_Chr20g0108411 Lupinus albus HOM05D000184 ORTHO05D000032 1.5e-87 326.6 234 77.4
VMungo1080G1552 Vigna mungo HOM05D000184 ORTHO05D000032 1.7e-83 313.2 237 73.0
Phvul.005G047600 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 3.9e-83 312.0 237 73.8
Glyma.08G163500 Glycine max HOM05D000184 ORTHO05D000032 6.9e-80 301.2 240 72.5
Lj3g0024590 Lotus japonicus HOM05D000184 ORTHO05D000032 1.5e-79 300.1 236 73.3
Lalb_Chr25g0284331 Lupinus albus HOM05D000184 ORTHO05D000032 4.5e-79 298.5 235 71.5
Glyma.15G263700 Glycine max HOM05D000184 ORTHO05D000032 8.4e-78 294.3 232 73.7
Haze_07762 Corylus avellana HOM05D000184 ORTHO05D000032 4.8e-73 278.5 224 68.3
Cfa019370 Carpinus fangiana HOM05D000184 ORTHO05D000032 1.5e-71 273.5 233 67.4
Potri.010G174100 Populus trichocarpa HOM05D000184 ORTHO05D000032 1.4e-69 266.9 230 63.9
arahy.Tifrunner.gnm1.ann1.ISGY16 Arachis hypogaea HOM05D000184 ORTHO05D000032 1.6e-68 263.5 238 66.0
arahy.Tifrunner.gnm1.ann1.7L0GHA Arachis hypogaea HOM05D000184 ORTHO05D000032 2.7e-68 262.7 238 65.1
Thecc.07G192100 Theobroma cacao HOM05D000184 ORTHO05D000032 3.5e-68 262.3 226 62.8
MD05G1238400 Malus domestica HOM05D000184 ORTHO05D000032 5.1e-67 258.5 233 63.5
CiPaw.11G056900 Carya illinoinensis HOM05D000184 ORTHO05D000032 2.5e-66 256.1 227 63.4
Prupe.4G128000 Prunus persica HOM05D000184 ORTHO05D000032 1.6e-65 253.4 233 63.5
Sabra10G0134000 Salix brachista HOM05D000184 ORTHO05D000032 8.1e-65 251.1 228 62.3
MD10G1216700 Malus domestica HOM05D000184 ORTHO05D000032 1.8e-64 250.0 233 62.7
Potri.008G081800 Populus trichocarpa HOM05D000184 ORTHO05D000032 4.0e-64 248.8 234 59.4
Gorai.013G146200 Gossypium raimondii HOM05D000184 ORTHO05D000032 5.8e-63 245.0 222 62.2
Gohir.A13G126400 Gossypium hirsutum HOM05D000184 ORTHO05D000032 7.6e-63 244.6 222 62.2
Gohir.D13G130100 Gossypium hirsutum HOM05D000184 ORTHO05D000032 7.6e-63 244.6 222 62.2
QL04p094038 Quercus lobata HOM05D000184 ORTHO05D000032 1.1e-61 240.7 223 61.4
RcHm_v2.0_Chr5g0023371 Rosa chinensis HOM05D000184 ORTHO05D000032 2.5e-61 239.6 232 62.5
FAN11G0390 Fragaria x ananassa HOM05D000184 ORTHO05D000032 9.3e-61 237.7 241 61.0
FAN16G0415 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.2e-60 237.3 240 61.2
FAN21G2684 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.1e-60 236.5 240 60.8
Atru.chr1.54 Acer truncatum HOM05D000184 ORTHO05D000032 6.0e-60 235.0 223 56.5
FvH4_3g14050 Fragaria vesca HOM05D000184 ORTHO05D000032 3.9e-59 232.3 235 61.3
Ciclev10005192m.g Citrus clementina HOM05D000184 ORTHO05D000032 8.7e-59 231.1 228 60.1
Duzib213G0073 Durio zibethinus HOM05D000184 ORTHO05D000032 1.1e-58 230.7 222 59.0
Duzib187G0018 Durio zibethinus HOM05D000184 ORTHO05D000032 1.5e-58 230.3 221 58.4
FAN25G0527 Fragaria x ananassa HOM05D000184 ORTHO05D000032 9.0e-56 221.1 231 59.7
Glyma.15G215000 Glycine max HOM05D000184 ORTHO05D000032 1.2e-55 220.7 233 59.2
COL.COLO4_24976 Corchorus olitorius HOM05D000184 ORTHO05D000032 5.9e-55 218.4 229 57.6
Manes.16G048201 Manihot esculenta HOM05D000184 ORTHO05D000032 3.8e-54 215.7 239 54.8
MSTRG.7093 Avicennia marina HOM05D000184 ORTHO05D000032 8.5e-54 214.5 236 55.5
TAR626G1612 Trochodendron aralioides HOM05D000184 ORTHO05D000032 2.5e-53 213.0 235 51.1
Manes.03G077700 Manihot esculenta HOM05D000184 ORTHO05D000032 6.1e-52 208.4 235 56.2
GSVIVG01036717001 Vitis vinifera HOM05D000184 ORTHO05D000032 1.5e-50 203.8 218 55.0
VMungo1127G2214 Vigna mungo HOM05D000184 ORTHO05D000032 7.4e-50 201.4 224 58.0
Cpa.g.sc32.94 Carica papaya HOM05D000184 ORTHO05D000032 2.2e-49 199.9 230 56.1
CANSAT56G4544 Cannabis sativa HOM05D000184 ORTHO05D000032 2.8e-49 199.5 253 53.4
Phvul.011G179300 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 4.8e-49 198.7 233 55.8
MSTRG.16091 Avicennia marina HOM05D000184 ORTHO05D000032 1.5e-47 193.7 237 53.2
MBI18_g29365_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 6.5e-46 188.3 207 52.7
Aqoxy1G01369 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 5.5e-45 185.3 210 48.1
Oeu029449.1 Olea europaea HOM05D000184 ORTHO05D000032 7.2e-45 184.9 227 48.9
Ca_02461_v3 Cicer arietinum L. HOM05D000184 ORTHO05D000032 1.2e-44 184.1 235 53.6
TPR.G7027 Trifolium pratense HOM05D000184 ORTHO05D000032 2.3e-43 179.9 94 96.8
MBI02_g41578_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 3.0e-43 179.5 233 47.6
CSS0007601 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 1.1e-42 177.6 230 51.3
CSS0018792 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 1.1e-42 177.6 230 51.3
Dinv42460 Davidia involucrata HOM05D000184 ORTHO05D000032 1.5e-42 177.2 231 52.4
Gorai.004G268700 Gossypium raimondii HOM05D000184 ORTHO05D000032 1.5e-42 177.2 224 51.3
Gohir.D08G252000 Gossypium hirsutum HOM05D000184 ORTHO05D000032 3.3e-42 176.0 224 50.9
Nn7g38373 Nelumbo nucifera HOM05D000184 ORTHO05D000032 4.4e-42 175.6 188 49.5
DCAR_009660 Daucus carota HOM05D000184 ORTHO05D000032 1.7e-41 173.7 226 50.0
DCAR_019908 Daucus carota HOM05D000184 ORTHO05D000032 2.2e-41 173.3 227 51.1
SalBow8G3100 Salvia bowleyana HOM05D000184 ORTHO05D000032 6.3e-41 171.8 234 49.6
SalBow8G4083 Salvia bowleyana HOM05D000184 ORTHO05D000032 6.3e-41 171.8 234 49.6
Sc06g0002020 Simmondsia chinensis HOM05D000184 ORTHO05D000032 6.3e-41 171.8 259 43.2
Dinv19573 Davidia involucrata HOM05D000184 ORTHO05D000032 6.9e-40 168.3 236 50.4
Oeu019734.1 Olea europaea HOM05D000184 ORTHO05D000032 2.6e-39 166.4 223 48.4
CDE02G3086 Ceratophyllum demersum HOM05D000184 ORTHO05D000032 1.1e-37 161.0 220 45.5
Gohir.A08G231600 Gossypium hirsutum HOM05D000184 ORTHO05D000032 1.6e-36 157.1 214 48.1
Nitab4.5_0000388g0040 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.6e-36 157.1 229 49.3
Nitab4.5_0007848g0010 Nicotiana tabacum HOM05D000184 ORTHO05D000032 2.7e-36 156.4 242 48.3
TPR.G9394 Trifolium pratense HOM05D000184 ORTHO05D000032 3.3e-34 149.4 229 50.2
CDE05G1133 Ceratophyllum demersum HOM05D000184 ORTHO05D000032 5.7e-34 148.7 220 43.2
AUR62026360 Chenopodium quinoa HOM05D000184 ORTHO05D000032 5.7e-34 148.7 246 47.6
CsaV3_7G023070 Cucumis sativus L. HOM05D000184 ORTHO05D000032 1.3e-33 147.5 249 45.4
Hund12033 Selenicereus undatus HOM05D000184 ORTHO05D000032 2.2e-33 146.7 241 43.2
AUR62006319 Chenopodium quinoa HOM05D000184 ORTHO05D000032 2.8e-33 146.4 229 48.9
ClCG09G022860 Citrullus lanatus HOM05D000184 ORTHO05D000032 1.4e-32 144.1 249 43.8
PGR031G3363 Punica granatum HOM05D000184 ORTHO05D000032 2.4e-32 143.3 192 49.5
MELO3C012590.2 Cucumis melo HOM05D000184 ORTHO05D000032 4.1e-32 142.5 241 45.2
CAN.G8.7 Capsicum annuum HOM05D000184 ORTHO05D000032 2.6e-31 139.8 229 44.5
Psat4g146200 Pisum sativum HOM05D000184 ORTHO05D000032 1.3e-30 137.5 205 46.3
unitig_748.g7852 Utricularia gibba HOM05D000184 ORTHO05D000032 1.3e-30 137.5 222 45.0
PGSC0003DMG400009658 Solanum tuberosum HOM05D000184 ORTHO05D000032 3.8e-30 136.0 231 44.6
TWI38G0166 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 5.5e-29 132.1 235 43.4
Sopen12g008150 Solanum pennellii HOM05D000184 ORTHO05D000032 1.6e-28 130.6 231 42.9
SGA_v2.0_scaffold239G44012 Striga asiatica HOM05D000184 ORTHO05D000032 5.2e-27 125.6 208 45.2
TWI38G0324 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 5.2e-27 125.6 225 45.3
Solyc12g017370.3 Solanum lycopersicum HOM05D000184 ORTHO05D000032 4.4e-26 122.5 231 41.6
THA.LOC104812387 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 7.5e-26 121.7 231 45.9
TWI38G0852 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 1.3e-25 120.9 223 44.4
EL10Ac7g17027 Beta vulgaris HOM05D000184 ORTHO05D000032 2.2e-25 120.2 236 41.9
Migut.M01502 Erythranthe guttata HOM05D000184 ORTHO05D000032 2.8e-25 119.8 268 40.7
MSTRG.13091 Avicennia marina HOM05D000184 ORTHO05D000032 1.8e-24 117.1 228 43.9
Rhsim06G0244400 Rhododendron simsii HOM05D000184 ORTHO05D000032 2.4e-24 116.7 288 35.8
AT1G79430 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 5.3e-24 115.5 228 43.9
AL2G40040 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 9.1e-24 114.8 229 44.1
vmacro22499 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 1.2e-23 114.4 240 40.0
Sed0020908 Sechium edule HOM05D000184 ORTHO05D000032 1.6e-23 114.0 239 43.5
BcaC08g47504 Brassica carinata HOM05D000184 ORTHO05D000032 3.5e-23 112.8 226 42.9
Ah.15g090340 Amaranthus hybridus HOM05D000184 ORTHO05D000032 7.7e-23 111.7 202 43.1
Carub.0002s2629 Capsella rubella HOM05D000184 ORTHO05D000032 1.0e-22 111.3 227 42.7
Thhalv10018760m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 5.0e-22 109.0 228 43.0
CARHR073090 Cardamine hirsuta HOM05D000184 ORTHO05D000032 6.5e-22 108.6 226 40.7
MELO3C019621.2 Cucumis melo HOM05D000184 ORTHO05D000032 1.9e-21 107.1 245 37.1
PSO541G1240 Papaver somniferum HOM05D000184 ORTHO05D000032 1.9e-21 107.1 253 34.0
PSO675G2625 Papaver somniferum HOM05D000184 ORTHO05D000032 7.2e-21 105.1 256 35.5
BcaB05g25198 Brassica carinata HOM05D000184 ORTHO05D000032 9.4e-21 104.8 233 40.8
CsaV3_6G013430 Cucumis sativus L. HOM05D000184 ORTHO05D000032 9.4e-21 104.8 247 37.2
Sp5g34480 Schrenkiella parvula HOM05D000184 ORTHO05D000032 9.4e-21 104.8 238 39.5
BraA02t07283Z Brassica rapa HOM05D000184 ORTHO05D000032 2.1e-20 103.6 234 41.0
unitig_26.g10056 Utricularia gibba HOM05D000184 ORTHO05D000032 2.7e-20 103.2 225 36.4
BcaC03g15892 Brassica carinata HOM05D000184 ORTHO05D000032 6.1e-20 102.1 224 41.5
A02p22810 Brassica napus HOM05D000184 ORTHO05D000032 6.1e-20 102.1 224 41.5
C02p36610 Brassica napus HOM05D000184 ORTHO05D000032 6.1e-20 102.1 224 41.5
Actinidia26208 Actinidia chinensis HOM05D000184 ORTHO05D000032 4.0e-19 99.4 257 35.8
Zm00001eb233310 Zea mays HOM05D000184 ORTHO05D000032 5.2e-19 99.0 202 38.6
BcaC08g45356 Brassica carinata HOM05D000184 ORTHO05D000032 8.8e-19 98.2 228 38.6
C06p29880 Brassica napus HOM05D000184 ORTHO05D000032 8.8e-19 98.2 228 38.6
A07p44500 Brassica napus HOM05D000184 ORTHO05D000032 1.2e-18 97.8 219 41.1
BraA07t31960Z Brassica rapa HOM05D000184 ORTHO05D000032 1.2e-18 97.8 219 41.1
C06p53330 Brassica napus HOM05D000184 ORTHO05D000032 2.0e-18 97.1 218 40.8
BolC6t40350H Brassica oleracea HOM05D000184 ORTHO05D000032 2.0e-18 97.1 218 40.8
Cc05_g16570 Coffea canephora HOM05D000184 ORTHO05D000032 2.0e-18 97.1 208 39.4
unitig_32.g11076 Utricularia gibba HOM05D000184 ORTHO05D000032 3.4e-18 96.3 178 41.0
AUR62041489 Chenopodium quinoa HOM05D000184 ORTHO05D000032 4.4e-18 95.9 128 44.5
A07p27150 Brassica napus HOM05D000184 ORTHO05D000032 1.3e-17 94.4 240 37.5
SGA_v2.0_scaffold472G52102 Striga asiatica HOM05D000184 ORTHO05D000032 1.7e-17 94.0 240 35.8
THA.LOC104808139 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 2.2e-17 93.6 202 42.1
Sed0026119 Sechium edule HOM05D000184 ORTHO05D000032 3.7e-17 92.8 239 35.1
AUR62043017 Chenopodium quinoa HOM05D000184 ORTHO05D000032 8.3e-17 91.7 129 44.2
Eucgr.F04475 Eucalyptus grandis HOM05D000184 ORTHO05D000032 4.1e-16 89.4 185 39.5
Sed0015076 Sechium edule HOM05D000184 ORTHO05D000032 5.4e-16 89.0 199 39.2
SGA_v2.0_scaffold186G40176 Striga asiatica HOM05D000184 ORTHO05D000032 1.6e-15 87.4 233 36.1
TAR629G1319 Trochodendron aralioides HOM05D000184 ORTHO05D000032 1.6e-15 87.4 126 47.6
HPP92_011005 Vanilla planifolia HOM05D000184 ORTHO05D000032 1.6e-15 87.4 194 38.1
BolC6t38150H Brassica oleracea HOM05D000184 ORTHO05D000032 2.9e-14 83.2 178 39.3
SHI33377 Sapria himalayana HOM05D000184 ORTHO05D000032 3.8e-14 82.8 154 39.6
Zm00001eb389770 Zea mays HOM05D000184 ORTHO05D000032 5.0e-14 82.4 211 30.8
Aa31LG4G1590 Aethionema arabicum HOM05D000184 ORTHO05D000032 8.6e-14 81.6 238 35.7
ClCG02G018740 Citrullus lanatus HOM05D000184 ORTHO05D000032 8.6e-14 81.6 235 35.7
DCAR_016851 Daucus carota HOM05D000184 ORTHO05D000032 1.6e-12 77.4 187 33.7
TAR627G0507 Trochodendron aralioides HOM05D000184 ORTHO05D000032 2.8e-12 76.6 117 44.4
Peaxi162Scf00006g00174 Petunia axillaris HOM05D000184 ORTHO05D000032 1.8e-11 73.9 222 34.2
SHI03876 Sapria himalayana HOM05D000616 ORTHO05D000233 1.8e-11 73.9 125 42.4
Peaxi162Scf00452g00240 Petunia axillaris HOM05D000184 ORTHO05D000032 3.0e-11 73.2 122 50.0
Actinidia12752 Actinidia chinensis HOM05D000184 ORTHO05D000032 2.0e-10 70.5 119 40.3
MBI02_g25819_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 2.0e-10 70.5 149 38.3
PSO675G0508 Papaver somniferum HOM05D000184 ORTHO05D000032 3.4e-10 69.7 157 37.6
PSO675G4424 Papaver somniferum HOM05D000184 ORTHO05D000032 4.4e-10 69.3 164 36.6
Os06g0664800 Oryza sativa ssp. japonica HOM05D000184 ORTHO05D000032 9.8e-10 68.2 223 32.3
QL04p063819 Quercus lobata HOM05D000184 ORTHO05D000032 2.2e-09 67.0 71 50.7
Migut.H01655 Erythranthe guttata HOM05D000184 ORTHO05D000032 2.8e-09 66.6 164 34.8
GSVIVG01015900001 Vitis vinifera HOM05D000184 ORTHO05D000032 2.8e-09 66.6 144 32.6
HanXRQChr13g0408891 Helianthus annuus HOM05D000184 ORTHO05D000032 3.7e-09 66.2 251 31.1
BcaB02g07214 Brassica carinata HOM05D000184 ORTHO05D000032 6.3e-09 65.5 234 32.9
QL04p063657 Quercus lobata HOM05D000184 ORTHO05D000032 6.3e-09 65.5 71 49.3
ATR1094G016 Amborella trichopoda HOM05D000184 ORTHO05D000032 4.1e-08 62.8 83 48.2
HanXRQChr03g0077891 Helianthus annuus HOM05D000184 ORTHO05D000032 3.5e-07 59.7 290 30.0
Hund30729 Selenicereus undatus HOM05D000184 ORTHO05D000032 5.9e-07 58.9 72 47.2
Sabra11G0014700 Salix brachista HOM05D000184 ORTHO05D000032 7.8e-07 58.5 145 30.3
Lsat_1_v5_gn_7_69101 Lactuca sativa HOM05D000184 ORTHO05D000032 1.0e-06 58.2 260 31.5
Aa31LG7G890 Aethionema arabicum HOM05D000184 ORTHO05D000032 1.7e-06 57.4 143 35.0
CiPaw.03G108600 Carya illinoinensis HOM05D000184 ORTHO05D000032 1.7e-06 57.4 71 47.9
Lj2A9T50 Lonicera japonica HOM05D000184 ORTHO05D000032 1.7e-06 57.4 304 27.0
Dinv34145 Davidia involucrata HOM05D000184 ORTHO05D000032 2.9e-06 56.6 64 50.0


User provided reference genes

Program Settings