Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 1.2e-43 179.5 97 100.0
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 2.6e-33 145.2 97 81.4
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 1.3e-32 142.9 97 79.4
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 2.9e-32 141.7 97 79.4
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 7.6e-25 117.1 100 69.0
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 2.7e-22 108.6 97 64.9
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 3.7e-19 98.2 98 62.2
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 3.1e-18 95.1 98 60.2
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 1.2e-17 93.2 90 62.2
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 5.8e-17 90.9 81 61.7
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 1.0e-16 90.1 100 53.0
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 1.3e-16 89.7 80 61.2
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 1.7e-16 89.4 101 53.5
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 3.8e-16 88.2 102 50.0
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 4.9e-16 87.8 99 56.6
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 1.1e-15 86.7 86 59.3
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 1.4e-15 86.3 95 55.8
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 1.4e-15 86.3 95 55.8
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 1.4e-15 86.3 98 51.0
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 1.9e-15 85.9 85 58.8
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 2.5e-15 85.5 87 56.3
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 3.2e-15 85.1 88 56.8
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 3.2e-15 85.1 83 56.6
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 4.2e-15 84.7 84 57.1
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 5.5e-15 84.3 87 56.3
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 7.1e-15 84.0 81 53.1
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.2e-14 83.2 85 55.3
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 1.2e-14 83.2 79 58.2
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 1.2e-14 83.2 87 55.2
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 1.6e-14 82.8 85 56.5
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 1.6e-14 82.8 90 51.1
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 1.6e-14 82.8 79 57.0
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 1.6e-14 82.8 79 57.0
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 1.6e-14 82.8 82 56.1
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 2.1e-14 82.4 79 60.8
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 3.5e-14 81.6 83 54.2
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 6.0e-14 80.9 79 57.0
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 6.0e-14 80.9 90 53.3
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 1.3e-13 79.7 89 50.6
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.3e-13 79.7 90 52.2
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 1.8e-13 79.3 87 52.9
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 2.3e-13 79.0 86 53.5
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 3.0e-13 78.6 78 57.7
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 3.9e-13 78.2 90 51.1
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 3.9e-13 78.2 84 48.8
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 5.1e-13 77.8 92 47.8
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 8.7e-13 77.0 78 55.1
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 8.7e-13 77.0 79 55.7
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 8.7e-13 77.0 92 45.7
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 1.5e-12 76.3 82 51.2
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 1.5e-12 76.3 87 47.1
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 1.9e-12 75.9 88 51.1
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.9e-12 75.9 86 52.3
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 1.9e-12 75.9 102 46.1
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 1.9e-12 75.9 87 44.8
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 1.9e-12 75.9 89 48.3
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 2.5e-12 75.5 88 48.9
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 3.3e-12 75.1 76 56.6
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 4.3e-12 74.7 100 45.0
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 5.7e-12 74.3 86 51.2
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 5.7e-12 74.3 87 47.1
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 5.7e-12 74.3 75 54.7
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 7.4e-12 73.9 86 46.5
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 2.8e-11 72.0 90 45.6
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 3.7e-11 71.6 63 60.3
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 3.7e-11 71.6 98 46.9
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 4.8e-11 71.2 81 46.9
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 4.8e-11 71.2 101 43.6
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 6.3e-11 70.9 90 44.4
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 6.3e-11 70.9 88 45.5
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 1.1e-10 70.1 81 46.9
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 1.4e-10 69.7 87 49.4
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 2.4e-10 68.9 76 51.3
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 4.1e-10 68.2 77 51.9
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 9.0e-10 67.0 77 48.1
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 1.5e-09 66.2 97 39.2
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 2.0e-09 65.9 97 40.2
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 3.4e-09 65.1 94 41.5
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 1.7e-08 62.8 76 48.7
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 2.9e-08 62.0 77 42.9
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 2.9e-08 62.0 87 41.4
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 6.5e-08 60.8 85 41.2
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 6.5e-08 60.8 78 48.7
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.4e-07 59.7 79 44.3
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 1.4e-07 59.7 60 51.7


User provided reference genes

Program Settings