Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36270 Trifolium pratense HOM05D001434 ORTHO05D004586 1.2e-46 189.5 98 100.0
TPR.G1225 Trifolium pratense HOM05D001434 ORTHO05D004586 1.3e-40 169.5 100 92.0
Medtr5g093230 Medicago truncatula HOM05D001434 ORTHO05D004586 6.5e-32 140.6 99 81.8
Psat0s3384g0040 Pisum sativum HOM05D001434 ORTHO05D004586 1.8e-29 132.5 100 79.0
Ca_06331_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 3.7e-27 124.8 99 72.7
Ca_30702_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 3.7e-27 124.8 99 72.7
LjContig00272g0017225 Lotus japonicus HOM05D001434 ORTHO05D004586 4.5e-25 117.9 101 71.3
Glyma.02G292300 Glycine max HOM05D001434 ORTHO05D004586 7.7e-25 117.1 101 68.3
Glyma.14G022300 Glycine max HOM05D001434 ORTHO05D004586 8.5e-24 113.6 101 69.3
Haze_09703 Corylus avellana HOM05D001434 ORTHO05D004586 5.2e-21 104.4 96 63.5
CiPaw.12G131400 Carya illinoinensis HOM05D001434 ORTHO05D004586 1.5e-20 102.8 96 61.5
Cfa020319 Carpinus fangiana HOM05D001434 ORTHO05D004586 9.7e-20 100.1 96 62.5
Lalb_Chr15g0081441 Lupinus albus HOM05D001434 ORTHO05D004586 2.8e-19 98.6 95 66.3
ClCG10G004950 Citrullus lanatus HOM05D001434 ORTHO05D004586 3.7e-19 98.2 101 59.4
arahy.Tifrunner.gnm1.ann1.09LR4A Arachis hypogaea HOM05D001434 ORTHO05D004586 4.8e-19 97.8 103 61.2
arahy.Tifrunner.gnm1.ann1.0VB874 Arachis hypogaea HOM05D001434 ORTHO05D004586 1.4e-18 96.3 105 61.0
Prupe.4G216600 Prunus persica HOM05D001434 ORTHO05D004586 3.1e-18 95.1 98 59.2
Glyma.18G094400 Glycine max HOM05D001434 ORTHO05D004586 5.3e-18 94.4 96 62.5
MD03G1198400 Malus domestica HOM05D001434 ORTHO05D004586 5.3e-18 94.4 100 60.0
MD11G1214500 Malus domestica HOM05D001434 ORTHO05D004586 7.0e-18 94.0 93 62.4
CsaV3_3G004600 Cucumis sativus L. HOM05D001434 ORTHO05D004586 1.2e-17 93.2 98 56.1
Phvul.008G269100 Phaseolus vulgaris HOM05D001434 ORTHO05D004586 2.6e-17 92.0 97 56.7
Ciclev10007601m.g Citrus clementina HOM05D001434 ORTHO05D004586 3.5e-17 91.7 95 56.8
QL08p009425 Quercus lobata HOM05D001434 ORTHO05D004586 3.5e-17 91.7 97 58.8
VMungo0647G2168 Vigna mungo HOM05D001434 ORTHO05D004586 3.5e-17 91.7 99 60.6
Phvul.006G046200 Phaseolus vulgaris HOM05D001434 ORTHO05D004586 5.9e-17 90.9 95 62.1
VMungo0540G0244 Vigna mungo HOM05D001434 ORTHO05D004586 1.0e-16 90.1 95 61.1
Lj6g0020939 Lotus japonicus HOM05D001434 ORTHO05D004586 1.3e-16 89.7 95 58.9
COL.COLO4_09683 Corchorus olitorius HOM05D001434 ORTHO05D004586 1.7e-16 89.4 99 57.6
Thecc.07G033300 Theobroma cacao HOM05D001434 ORTHO05D004586 3.8e-16 88.2 97 58.8
Atru.chr2.3466 Acer truncatum HOM05D001434 ORTHO05D004586 6.5e-16 87.4 97 53.6
Atru.chr2.3480 Acer truncatum HOM05D001434 ORTHO05D004586 6.5e-16 87.4 97 53.6
Ca_14751_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 1.1e-15 86.7 94 58.5
Glyma.08G319100 Glycine max HOM05D001434 ORTHO05D004586 1.5e-15 86.3 95 58.9
Gohir.A01G081200 Gossypium hirsutum HOM05D001434 ORTHO05D004586 1.9e-15 85.9 96 56.2
Gohir.A04G013800 Gossypium hirsutum HOM05D001434 ORTHO05D004586 1.9e-15 85.9 96 56.2
CANSAT11G2500 Cannabis sativa HOM05D001434 ORTHO05D004586 2.5e-15 85.5 100 61.0
Duzib213G0248 Durio zibethinus HOM05D001434 ORTHO05D004586 3.2e-15 85.1 96 56.2
Gohir.D01G068300 Gossypium hirsutum HOM05D001434 ORTHO05D004586 5.5e-15 84.3 96 55.2
Gorai.002G090300 Gossypium raimondii HOM05D001434 ORTHO05D004586 5.5e-15 84.3 96 55.2
Sabra11G0093800 Salix brachista HOM05D001434 ORTHO05D004586 8.0e-14 80.5 102 51.0
Sed0001205 Sechium edule HOM05D001434 ORTHO05D004586 1.8e-13 79.3 107 50.5
Gorai.009G440800 Gossypium raimondii HOM05D001434 ORTHO05D004586 3.0e-13 78.6 96 52.1
Cpa.g.sc12.281 Carica papaya HOM05D001434 ORTHO05D004586 4.0e-13 78.2 92 54.3
FAN16G0031 Fragaria x ananassa HOM05D001434 ORTHO05D004586 4.0e-13 78.2 98 53.1
arahy.Tifrunner.gnm1.ann1.MF778S Arachis hypogaea HOM05D001434 ORTHO05D004586 8.8e-13 77.0 97 52.6
arahy.Tifrunner.gnm1.ann1.QFUU5V Arachis hypogaea HOM05D001434 ORTHO05D004586 8.8e-13 77.0 97 52.6
RcHm_v2.0_Chr5g0040501 Rosa chinensis HOM05D001434 ORTHO05D004586 8.8e-13 77.0 107 51.4
Carub.0008s1533 Capsella rubella HOM05D001434 ORTHO05D004586 1.2e-12 76.6 94 51.1
Manes.03G131600 Manihot esculenta HOM05D001434 ORTHO05D004586 1.2e-12 76.6 101 49.5
TWI38G0863 Tripterygium wilfordii HOM05D001434 ORTHO05D004586 1.5e-12 76.3 94 51.1
Dinv40771 Davidia involucrata HOM05D001434 ORTHO05D004586 2.0e-12 75.9 101 49.5
Psat5g174680 Pisum sativum HOM05D001434 ORTHO05D004586 2.6e-12 75.5 97 52.6
Ah.04g166010 Amaranthus hybridus HOM05D001434 ORTHO05D004586 4.4e-12 74.7 99 48.5
Manes.15G070100 Manihot esculenta HOM05D001434 ORTHO05D004586 4.4e-12 74.7 101 50.5
THA.LOC104817673 Tarenaya hassleriana HOM05D001434 ORTHO05D004586 4.4e-12 74.7 94 52.1
BcaC04g20273 Brassica carinata HOM05D001434 ORTHO05D004586 5.7e-12 74.3 105 48.6
BolC9t57432H Brassica oleracea HOM05D001434 ORTHO05D004586 5.7e-12 74.3 105 48.6
Cc05_g13980 Coffea canephora HOM05D001434 ORTHO05D004586 7.5e-12 73.9 102 48.0
TWI39G0476 Tripterygium wilfordii HOM05D001434 ORTHO05D004586 7.5e-12 73.9 94 50.0
Dinv22250 Davidia involucrata HOM05D001434 ORTHO05D004586 9.8e-12 73.6 103 50.5
Sp6g17000 Schrenkiella parvula HOM05D001434 ORTHO05D004586 9.8e-12 73.6 94 51.1
Lalb_Chr17g0348531 Lupinus albus HOM05D001434 ORTHO05D004586 1.3e-11 73.2 93 52.7
Potri.011G089300 Populus trichocarpa HOM05D001434 ORTHO05D004586 1.3e-11 73.2 102 48.0
Eucgr.F00743 Eucalyptus grandis HOM05D001434 ORTHO05D004586 1.7e-11 72.8 111 44.1
CARHR268410 Cardamine hirsuta HOM05D001434 ORTHO05D004586 2.2e-11 72.4 94 51.1
Thhalv10012904m.g Eutrema salsugineum HOM05D001434 ORTHO05D004586 2.2e-11 72.4 94 48.9
AUR62015810 Chenopodium quinoa HOM05D001434 ORTHO05D004586 2.8e-11 72.0 93 53.8
BraA10t43329Z Brassica rapa HOM05D001434 ORTHO05D004586 4.8e-11 71.2 115 43.5
FvH4_3g23020 Fragaria vesca HOM05D001434 ORTHO05D004586 4.8e-11 71.2 105 49.5
FAN11G3048 Fragaria x ananassa HOM05D001434 ORTHO05D004586 4.8e-11 71.2 105 49.5
PGSC0003DMG400022311 Solanum tuberosum HOM05D001434 ORTHO05D004586 4.8e-11 71.2 100 44.0
AL8G30560 Arabidopsis lyrata HOM05D001434 ORTHO05D004586 6.3e-11 70.9 94 47.9
Aa31LG3G10990 Aethionema arabicum HOM05D001434 ORTHO05D004586 8.3e-11 70.5 95 48.4
Ah.06g182830 Amaranthus hybridus HOM05D001434 ORTHO05D004586 8.3e-11 70.5 95 48.4
CAN.G337.77 Capsicum annuum HOM05D001434 ORTHO05D004586 8.3e-11 70.5 100 47.0
TPR.G33786 Trifolium pratense HOM05D001434 ORTHO05D004586 8.3e-11 70.5 98 52.0
Solyc07g064740.3 Solanum lycopersicum HOM05D001434 ORTHO05D004586 1.1e-10 70.1 100 43.0
Sopen07g032940 Solanum pennellii HOM05D001434 ORTHO05D004586 1.1e-10 70.1 100 43.0
FAN25G2752 Fragaria x ananassa HOM05D001434 ORTHO05D004586 1.4e-10 69.7 105 48.6
FAN25G2755 Fragaria x ananassa HOM05D001434 ORTHO05D004586 1.4e-10 69.7 105 48.6
EL10Ac4g07774 Beta vulgaris HOM05D001434 ORTHO05D004586 1.8e-10 69.3 100 47.0
BcaB08g35869 Brassica carinata HOM05D001434 ORTHO05D004586 1.8e-10 69.3 105 45.7
AUR62020408 Chenopodium quinoa HOM05D001434 ORTHO05D004586 1.8e-10 69.3 92 52.2
Rhsim06G0219000 Rhododendron simsii HOM05D001434 ORTHO05D004586 2.4e-10 68.9 98 45.9
Nitab4.5_0002287g0060 Nicotiana tabacum HOM05D001434 ORTHO05D004586 3.1e-10 68.6 97 44.3
Oeu034037.1 Olea europaea HOM05D001434 ORTHO05D004586 3.1e-10 68.6 104 50.0
THA.LOC104811616 Tarenaya hassleriana HOM05D001434 ORTHO05D004586 3.1e-10 68.6 94 50.0
C03p16670 Brassica napus HOM05D001434 ORTHO05D004586 5.4e-10 67.8 94 51.1
Medtr3g052790 Medicago truncatula HOM05D001434 ORTHO05D004586 7.0e-10 67.4 99 49.5
Lsat_1_v5_gn_5_2920 Lactuca sativa HOM05D001434 ORTHO05D004586 1.2e-09 66.6 97 45.4
BolC3t14087H Brassica oleracea HOM05D001434 ORTHO05D004586 1.6e-09 66.2 94 50.0
Hund23230 Selenicereus undatus HOM05D001434 ORTHO05D004586 2.7e-09 65.5 97 48.5
Nitab4.5_0000328g0030 Nicotiana tabacum HOM05D001434 ORTHO05D004586 3.5e-09 65.1 97 43.3
GSVIVG01037676001 Vitis vinifera HOM05D001434 ORTHO05D004586 3.5e-09 65.1 95 44.2
BraA03t10726Z Brassica rapa HOM05D001434 ORTHO05D004586 4.5e-09 64.7 94 48.9
Sc16g0005900 Simmondsia chinensis HOM05D001434 ORTHO05D004586 5.9e-09 64.3 104 42.3
Migut.H01814 Erythranthe guttata HOM05D001434 ORTHO05D004586 1.0e-08 63.5 94 47.9
PSO541G5896 Papaver somniferum HOM05D001434 ORTHO05D004586 1.0e-08 63.5 93 43.0
TAR624G0691 Trochodendron aralioides HOM05D001434 ORTHO05D004586 1.7e-08 62.8 97 41.2
Lalb_Chr04g0248331 Lupinus albus HOM05D001434 ORTHO05D004586 2.2e-08 62.4 102 46.1
SGA_v2.0_scaffold8G04338 Striga asiatica HOM05D001434 ORTHO05D004586 2.2e-08 62.4 96 42.7
BcaC01g06341 Brassica carinata HOM05D001434 ORTHO05D004586 2.9e-08 62.0 100 47.0
A03p14290 Brassica napus HOM05D001434 ORTHO05D004586 6.5e-08 60.8 94 47.9
ECA246G3933 Erigeron canadensis HOM05D001434 ORTHO05D004586 2.5e-07 58.9 90 44.4
HanXRQChr05g0159431 Helianthus annuus HOM05D001434 ORTHO05D004586 4.2e-07 58.2 95 37.9
BcaC03g14270 Brassica carinata HOM05D001434 ORTHO05D004586 5.5e-07 57.8 93 45.2
Peaxi162Scf00235g00421 Petunia axillaris HOM05D001434 ORTHO05D004586 7.2e-07 57.4 112 36.6
Hund01974 Selenicereus undatus HOM05D001434 ORTHO05D004586 7.2e-07 57.4 96 43.8
DCAR_016715 Daucus carota HOM05D001434 ORTHO05D004586 9.4e-07 57.0 99 40.4
MSTRG.12984 Avicennia marina HOM05D001434 ORTHO05D004586 1.6e-06 56.2 96 42.7
CSS0024501 Camellia sinensis var. sinensis HOM05D001434 ORTHO05D004586 1.6e-06 56.2 117 41.0
vmacro02222 Vaccinium macrocarpon HOM05D001434 ORTHO05D004586 3.6e-06 55.1 99 42.4
MBI02_g25402_MAGBIO Magnolia biondii HOM05D001434 ORTHO05D004586 4.7e-06 54.7 99 37.4


User provided reference genes

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