Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36267 Trifolium pratense HOM05D004523 ORTHO05D006021 4.8e-44 180.6 83 100.0
TPR.G30285 Trifolium pratense HOM05D004523 ORTHO05D006021 5.5e-24 114.0 53 98.1
Lalb_Chr11g0062021 Lupinus albus HOM05D004523 ORTHO05D006021 6.7e-22 107.1 53 90.6
Lj1g0008508 Lotus japonicus HOM05D004523 ORTHO05D006021 2.0e-21 105.5 57 84.2
Ca_02055_v3 Cicer arietinum L. HOM05D004523 ORTHO05D006021 3.3e-21 104.8 53 88.7
arahy.Tifrunner.gnm1.ann1.22W300 Arachis hypogaea HOM05D004523 ORTHO05D006021 4.4e-21 104.4 53 88.7
arahy.Tifrunner.gnm1.ann1.F7HX5D Arachis hypogaea HOM05D004523 ORTHO05D006021 4.4e-21 104.4 53 88.7
VMungo1309G0339 Vigna mungo HOM05D004523 ORTHO05D006021 7.5e-21 103.6 53 88.7
Glyma.04G026100 Glycine max HOM05D004523 ORTHO05D006021 9.7e-21 103.2 53 86.8
Glyma.06G025900 Glycine max HOM05D004523 ORTHO05D006021 1.7e-20 102.4 53 86.8
Lalb_Chr08g0246121 Lupinus albus HOM05D004523 ORTHO05D006021 1.7e-20 102.4 53 84.9
Oeu007351.3 Olea europaea HOM05D004523 ORTHO05D006021 2.2e-20 102.1 53 84.9
Psat5g014360 Pisum sativum HOM05D004523 ORTHO05D006021 2.8e-20 101.7 53 86.8
ClCG05G018540 Citrullus lanatus HOM05D004523 ORTHO05D006021 8.2e-20 100.1 53 84.9
Medtr3g113250 Medicago truncatula HOM05D004523 ORTHO05D006021 8.2e-20 100.1 53 83.0
FvH4_2g38830 Fragaria vesca HOM05D004523 ORTHO05D006021 1.1e-19 99.8 53 86.8
FAN15G3344 Fragaria x ananassa HOM05D004523 ORTHO05D006021 1.1e-19 99.8 53 86.8
FAN20G1124 Fragaria x ananassa HOM05D004523 ORTHO05D006021 1.1e-19 99.8 53 86.8
RcHm_v2.0_Chr6g0302441 Rosa chinensis HOM05D004523 ORTHO05D006021 1.1e-19 99.8 53 86.8
Phvul.009G015100 Phaseolus vulgaris HOM05D004523 ORTHO05D006021 1.4e-19 99.4 53 83.0
Sed0024533 Sechium edule HOM05D004523 ORTHO05D006021 1.8e-19 99.0 53 83.0
Ciclev10000798m.g Citrus clementina HOM05D004523 ORTHO05D006021 2.4e-19 98.6 53 84.9
MELO3C003774.2 Cucumis melo HOM05D004523 ORTHO05D006021 2.4e-19 98.6 53 83.0
Eucgr.F02093 Eucalyptus grandis HOM05D004523 ORTHO05D006021 2.4e-19 98.6 53 84.9
MD15G1014900 Malus domestica HOM05D004523 ORTHO05D006021 2.4e-19 98.6 53 84.9
PGR031G3749 Punica granatum HOM05D004523 ORTHO05D006021 2.4e-19 98.6 53 84.9
QL02p010964 Quercus lobata HOM05D004523 ORTHO05D006021 3.1e-19 98.2 53 84.9
Sed0001890 Sechium edule HOM05D004523 ORTHO05D006021 3.1e-19 98.2 53 83.0
EL10Ac1g00454 Beta vulgaris HOM05D004523 ORTHO05D006021 4.1e-19 97.8 53 81.1
CANSAT80G1473 Cannabis sativa HOM05D004523 ORTHO05D006021 4.1e-19 97.8 53 83.0
CiPaw.07G152800 Carya illinoinensis HOM05D004523 ORTHO05D006021 4.1e-19 97.8 53 84.9
Hma1.2p1_1339F.1_g276600 Hydrangea macrophylla HOM05D004523 ORTHO05D006021 4.1e-19 97.8 53 81.1
CSS0014696 Camellia sinensis var. sinensis HOM05D004523 ORTHO05D006021 5.3e-19 97.4 53 83.0
Cpa.g.sc26.20 Carica papaya HOM05D004523 ORTHO05D006021 5.3e-19 97.4 53 83.0
CsaV3_3G045630 Cucumis sativus L. HOM05D004523 ORTHO05D006021 5.3e-19 97.4 53 81.1
Manes.05G151200 Manihot esculenta HOM05D004523 ORTHO05D006021 7.0e-19 97.1 53 81.1
Potri.002G026600 Populus trichocarpa HOM05D004523 ORTHO05D006021 7.0e-19 97.1 53 83.0
Sabra02G0020700 Salix brachista HOM05D004523 ORTHO05D006021 7.0e-19 97.1 53 83.0
TWI56G1290 Tripterygium wilfordii HOM05D004523 ORTHO05D006021 7.0e-19 97.1 53 83.0
Atru.chr13.334 Acer truncatum HOM05D004523 ORTHO05D006021 9.1e-19 96.7 53 83.0
Gorai.010G005900 Gossypium raimondii HOM05D004523 ORTHO05D006021 9.1e-19 96.7 53 81.1
Actinidia15399 Actinidia chinensis HOM05D004523 ORTHO05D006021 1.2e-18 96.3 53 83.0
Dinv31821 Davidia involucrata HOM05D004523 ORTHO05D006021 1.2e-18 96.3 53 81.1
Duzib093G2179 Durio zibethinus HOM05D004523 ORTHO05D006021 1.2e-18 96.3 53 83.0
Nn6g32283 Nelumbo nucifera HOM05D004523 ORTHO05D006021 1.2e-18 96.3 53 81.1
Oeu024517.1 Olea europaea HOM05D004523 ORTHO05D006021 1.2e-18 96.3 53 79.2
Peaxi162Scf00287g01630 Petunia axillaris HOM05D004523 ORTHO05D006021 1.2e-18 96.3 53 83.0
THA.LOC104809379 Tarenaya hassleriana HOM05D004523 ORTHO05D006021 1.2e-18 96.3 53 79.2
CANSAT25G1932 Cannabis sativa HOM05D004523 ORTHO05D006021 1.6e-18 95.9 53 83.0
Migut.C00821 Erythranthe guttata HOM05D004523 ORTHO05D006021 1.6e-18 95.9 53 81.1
Rhsim06G0025000 Rhododendron simsii HOM05D004523 ORTHO05D006021 1.6e-18 95.9 53 81.1
RhsimUnG0148000 Rhododendron simsii HOM05D004523 ORTHO05D006021 1.6e-18 95.9 53 81.1
MD08G1015900 Malus domestica HOM05D004523 ORTHO05D006021 2.0e-18 95.5 53 81.1
Prupe.1G369200 Prunus persica HOM05D004523 ORTHO05D006021 2.0e-18 95.5 53 83.0
SGA_v2.0_scaffold11G05887 Striga asiatica HOM05D004523 ORTHO05D006021 2.0e-18 95.5 53 79.2
TAR376G0074 Trochodendron aralioides HOM05D004523 ORTHO05D006021 2.0e-18 95.5 53 81.1
MSTRG.1214 Avicennia marina HOM05D004523 ORTHO05D006021 2.7e-18 95.1 53 79.2
Dinv39495 Davidia involucrata HOM05D004523 ORTHO05D006021 2.7e-18 95.1 53 79.2
Gohir.A06G005700 Gossypium hirsutum HOM05D004523 ORTHO05D006021 2.7e-18 95.1 53 81.1
Manes.18G016300 Manihot esculenta HOM05D004523 ORTHO05D006021 2.7e-18 95.1 53 81.1
Nitab4.5_0005185g0050 Nicotiana tabacum HOM05D004523 ORTHO05D006021 2.7e-18 95.1 53 81.1
Oeu007048.1 Olea europaea HOM05D004523 ORTHO05D006021 2.7e-18 95.1 53 81.1
Potri.005G236000 Populus trichocarpa HOM05D004523 ORTHO05D006021 3.5e-18 94.7 53 81.1
Sabra05G0182400 Salix brachista HOM05D004523 ORTHO05D006021 3.5e-18 94.7 53 81.1
Cc10_g01960 Coffea canephora HOM05D004523 ORTHO05D006021 4.5e-18 94.4 53 79.2
vmacro04335 Vaccinium macrocarpon HOM05D004523 ORTHO05D006021 4.5e-18 94.4 76 57.9
Gohir.D06G001500 Gossypium hirsutum HOM05D004523 ORTHO05D006021 5.9e-18 94.0 53 79.2
vmacro21709 Vaccinium macrocarpon HOM05D004523 ORTHO05D006021 5.9e-18 94.0 53 79.2
CSS0004717 Camellia sinensis var. sinensis HOM05D004523 ORTHO05D006021 7.7e-18 93.6 76 57.9
GSVIVG01009847001 Vitis vinifera HOM05D004523 ORTHO05D006021 7.7e-18 93.6 53 79.2
Cfa013919 Carpinus fangiana HOM05D004523 ORTHO05D006021 1.0e-17 93.2 53 79.2
Lj4A28G65 Lonicera japonica HOM05D004523 ORTHO05D006021 1.0e-17 93.2 53 81.1
AUR62014404 Chenopodium quinoa HOM05D004523 ORTHO05D006021 1.3e-17 92.8 53 77.4
AUR62019141 Chenopodium quinoa HOM05D004523 ORTHO05D006021 1.3e-17 92.8 53 77.4
COL.COLO4_26176 Corchorus olitorius HOM05D004523 ORTHO05D006021 1.3e-17 92.8 53 79.2
Rhsim07G0245600 Rhododendron simsii HOM05D004523 ORTHO05D006021 1.3e-17 92.8 63 65.1
SGA_v2.0_scaffold92G28268 Striga asiatica HOM05D004523 ORTHO05D006021 1.3e-17 92.8 53 77.4
DCAR_022439 Daucus carota HOM05D004523 ORTHO05D006021 1.7e-17 92.4 53 79.2
Lsat_1_v5_gn_1_16121 Lactuca sativa HOM05D004523 ORTHO05D006021 1.7e-17 92.4 53 79.2
Nn5g29261 Nelumbo nucifera HOM05D004523 ORTHO05D006021 1.7e-17 92.4 53 79.2
Thecc.08G039300 Theobroma cacao HOM05D004523 ORTHO05D006021 1.7e-17 92.4 53 77.4
unitig_32.g11145 Utricularia gibba HOM05D004523 ORTHO05D006021 1.7e-17 92.4 53 77.4
Gohir.A05G257600 Gossypium hirsutum HOM05D004523 ORTHO05D006021 2.2e-17 92.0 53 77.4
MSTRG.25223 Avicennia marina HOM05D004523 ORTHO05D006021 2.9e-17 91.7 53 75.5
Gorai.009G270600 Gossypium raimondii HOM05D004523 ORTHO05D006021 2.9e-17 91.7 53 77.4
Aqoxy6G02327 Aquilegia oxysepala HOM05D004523 ORTHO05D006021 3.8e-17 91.3 53 77.4
Hund17232 Selenicereus undatus HOM05D004523 ORTHO05D006021 3.8e-17 91.3 53 79.2
CAN.G1271.10 Capsicum annuum HOM05D004523 ORTHO05D006021 5.0e-17 90.9 53 79.2
Gohir.D05G259000 Gossypium hirsutum HOM05D004523 ORTHO05D006021 1.1e-16 89.7 53 77.4
Lsat_1_v5_gn_4_114800 Lactuca sativa HOM05D004523 ORTHO05D006021 1.1e-16 89.7 53 73.6
Aa31LG7G4380 Aethionema arabicum HOM05D004523 ORTHO05D006021 1.5e-16 89.4 53 75.5
ECA247G3421 Erigeron canadensis HOM05D004523 ORTHO05D006021 1.5e-16 89.4 53 75.5
HanXRQChr02g0044011 Helianthus annuus HOM05D004523 ORTHO05D006021 1.5e-16 89.4 53 77.4
SMO164G0139 Selaginella moellendorffii HOM05D004523 ORTHO05D006021 1.5e-16 89.4 53 71.7
CARHR020380 Cardamine hirsuta HOM05D004523 ORTHO05D006021 1.9e-16 89.0 54 77.8
SalBow7G1964 Salvia bowleyana HOM05D004523 ORTHO05D006021 3.2e-16 88.2 53 73.6
Solyc04g081200.3 Solanum lycopersicum HOM05D004523 ORTHO05D006021 3.2e-16 88.2 53 75.5
Sopen04g034810 Solanum pennellii HOM05D004523 ORTHO05D006021 3.2e-16 88.2 53 75.5
PGSC0003DMG400003721 Solanum tuberosum HOM05D004523 ORTHO05D006021 3.2e-16 88.2 53 75.5
FAN27G1233 Fragaria x ananassa HOM05D004523 ORTHO05D006021 4.2e-16 87.8 59 72.9
PSO675G7270 Papaver somniferum HOM05D004523 ORTHO05D006021 4.2e-16 87.8 53 77.4
ATR0147G022 Amborella trichopoda HOM05D004523 ORTHO05D006021 5.5e-16 87.4 53 73.6
BcaB03g14359 Brassica carinata HOM05D004523 ORTHO05D006021 7.2e-16 87.0 54 77.8
BcaB03g14360 Brassica carinata HOM05D004523 ORTHO05D006021 7.2e-16 87.0 54 77.8
A07p16200 Brassica napus HOM05D004523 ORTHO05D006021 7.2e-16 87.0 54 77.8
C07p23650 Brassica napus HOM05D004523 ORTHO05D006021 7.2e-16 87.0 54 77.8
BolC7t42897H Brassica oleracea HOM05D004523 ORTHO05D006021 7.2e-16 87.0 54 77.8
BraA07t29346Z Brassica rapa HOM05D004523 ORTHO05D006021 7.2e-16 87.0 54 77.8
Sc02g0004880 Simmondsia chinensis HOM05D004523 ORTHO05D006021 7.2e-16 87.0 53 71.7
Mapoly0046s0091 Marchantia polymorpha HOM05D004523 ORTHO05D006021 9.4e-16 86.7 53 73.6
Os04g0662800 Oryza sativa ssp. japonica HOM05D004523 ORTHO05D006021 9.4e-16 86.7 53 71.7
PSO478G0253 Papaver somniferum HOM05D004523 ORTHO05D006021 9.4e-16 86.7 53 75.5
PSO782G5581 Papaver somniferum HOM05D004523 ORTHO05D006021 9.4e-16 86.7 53 75.5
Carub.0001s1940 Capsella rubella HOM05D004523 ORTHO05D006021 1.6e-15 85.9 54 74.1
Haze_22594 Corylus avellana HOM05D004523 ORTHO05D006021 1.6e-15 85.9 53 75.5
BcaB03g14429 Brassica carinata HOM05D004523 ORTHO05D006021 2.1e-15 85.5 54 75.9
SEGI_37381 Sequoiadendron giganteum HOM05D004523 ORTHO05D006021 2.1e-15 85.5 53 67.9
AL1G32610 Arabidopsis lyrata HOM05D004523 ORTHO05D006021 2.7e-15 85.1 54 74.1
AT1G19880 Arabidopsis thaliana HOM05D004523 ORTHO05D006021 2.7e-15 85.1 54 74.1
Pp3c23_7830 Physcomitrium patens HOM05D004523 ORTHO05D006021 2.7e-15 85.1 53 69.8
TAR625G0232 Trochodendron aralioides HOM05D004523 ORTHO05D006021 2.7e-15 85.1 53 71.7
BcaB07g32006 Brassica carinata HOM05D004523 ORTHO05D006021 3.6e-15 84.7 54 74.1
Thhalv10007331m.g Eutrema salsugineum HOM05D004523 ORTHO05D006021 3.6e-15 84.7 54 74.1
HanXRQChr04g0106361 Helianthus annuus HOM05D004523 ORTHO05D006021 3.6e-15 84.7 53 71.7
ECA232G3022 Erigeron canadensis HOM05D004523 ORTHO05D006021 4.7e-15 84.3 53 71.7
CDE09G0069 Ceratophyllum demersum HOM05D004523 ORTHO05D006021 6.1e-15 84.0 53 71.7
PSO782G4507 Papaver somniferum HOM05D004523 ORTHO05D006021 1.4e-14 82.8 52 75.0
PSO478G2324 Papaver somniferum HOM05D004523 ORTHO05D006021 1.8e-14 82.4 52 75.0
Sp1g17680 Schrenkiella parvula HOM05D004523 ORTHO05D006021 2.3e-14 82.0 54 72.2
HPP92_024533 Vanilla planifolia HOM05D004523 ORTHO05D006021 2.3e-14 82.0 53 69.8
A06p16090 Brassica napus HOM05D004523 ORTHO05D006021 8.8e-14 80.1 54 68.5
BraA06t24714Z Brassica rapa HOM05D004523 ORTHO05D006021 8.8e-14 80.1 54 68.5
BcaC05g25883 Brassica carinata HOM05D004523 ORTHO05D006021 5.9e-10 67.4 62 56.5
CBR_g15958 Chara braunii HOM05D004523 ORTHO05D006021 7.7e-10 67.0 53 56.6
C05p18390 Brassica napus HOM05D004523 ORTHO05D006021 3.8e-09 64.7 70 50.0
MCO09G275 Micromonas commoda HOM05D004523 ORTHO05D006021 1.6e-07 59.3 48 54.2


User provided reference genes

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